Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.94□□□□□ -1.3
COL6A1P12109 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.94□□□□□ -1.3
COL6A1P12109 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.94□□□□□ -1.3
COL6A1P12109 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 ZNF402P-201ENST00000404435 3100 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 HSPD1P14-201ENST00000432666 1618 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC6.94□□□□□ -1.3
COL6A1P12109 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.93□□□□□ -1.3
COL6A1P12109 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.93□□□□□ -1.3
COL6A1P12109 AL139384.2-201ENST00000613809 3590 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC6.93□□□□□ -1.3
COL6A1P12109 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.93□□□□□ -1.3
COL6A1P12109 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.93□□□□□ -1.3
COL6A1P12109 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.93□□□□□ -1.3
COL6A1P12109 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 RNU1-49P-201ENST00000363468 159 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
COL6A1P12109 AL672167.2-201ENST00000377164 879 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 AL049545.1-201ENST00000401856 572 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 RN7SKP161-201ENST00000411110 305 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 DPPA2P3-201ENST00000411853 655 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 AL592310.1-201ENST00000414330 671 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 MORF4L1P6-201ENST00000418771 268 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 AC013262.1-201ENST00000426710 252 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 MTND2P5-201ENST00000432656 1006 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 RPL7P34-201ENST00000433316 712 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 PPIAP10-201ENST00000438675 458 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC6.93□□□□□ -1.3
COL6A1P12109 MTCO2P3-201ENST00000442543 421 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 FTLP8-201ENST00000446770 267 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 EIF2S2P2-201ENST00000447161 982 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 MTND1P29-201ENST00000448112 647 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 AL139156.3-201ENST00000454802 394 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 BZW1P1-201ENST00000454901 1240 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC092865.4-201ENST00000477936 615 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 SSR3-208ENST00000496050 579 ntTSL 4 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.93□□□□□ -1.3
COL6A1P12109 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
COL6A1P12109 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6.93□□□□□ -1.3
COL6A1P12109 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.93□□□□□ -1.3
COL6A1P12109 AC104695.2-201ENST00000605056 775 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 AC245389.2-201ENST00000616023 576 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 AC242843.1-201ENST00000618702 573 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 AL669942.2-201ENST00000620352 697 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 AP002791.1-201ENST00000623291 381 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.93□□□□□ -1.3
COL6A1P12109 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.93□□□□□ -1.3
COL6A1P12109 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.93□□□□□ -1.3
COL6A1P12109 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.93□□□□□ -1.3
COL6A1P12109 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.93□□□□□ -1.3
COL6A1P12109 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 RAD17P2-201ENST00000451754 1977 ntBASIC6.93□□□□□ -1.3
COL6A1P12109 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.93□□□□□ -1.3
COL6A1P12109 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL6A1P12109 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
COL6A1P12109 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.92□□□□□ -1.3
COL6A1P12109 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC6.92□□□□□ -1.3
COL6A1P12109 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.92□□□□□ -1.3
COL6A1P12109 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 RNA5SP350-201ENST00000363298 111 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 SNORD115-48-201ENST00000364764 76 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 AL353625.1-202ENST00000366273 571 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 BPHL-201ENST00000380368 797 ntTSL 5 BASIC6.92□□□□□ -1.3
COL6A1P12109 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 LRRC37BP1-201ENST00000398851 714 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 OR7E101P-201ENST00000400428 513 ntBASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms