Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC7.17□□□□□ -1.26
COL3A1P02461 MYO5BP2-201ENST00000449815 1277 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AL451063.1-201ENST00000450164 1133 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 ATG10-208ENST00000513634 618 ntTSL 2 BASIC7.17□□□□□ -1.26
COL3A1P02461 SETP12-201ENST00000514068 805 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 RNA5SP92-201ENST00000516437 110 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 RN7SKP99-201ENST00000517028 307 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC7.17□□□□□ -1.26
COL3A1P02461 MAL2-208ENST00000523307 556 ntTSL 4 BASIC7.17□□□□□ -1.26
COL3A1P02461 OR8Q1P-201ENST00000526467 655 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 AL139124.1-201ENST00000609123 421 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AC016769.4-201ENST00000616893 535 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AC005618.4-201ENST00000625053 554 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
COL3A1P02461 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
COL3A1P02461 DUTP5-201ENST00000406790 469 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC7.17□□□□□ -1.26
COL3A1P02461 RPL12P17-201ENST00000432393 498 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 ZNF736P1Y-201ENST00000440402 1276 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AL163193.1-201ENST00000444895 788 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AURKAPS1-201ENST00000451805 1212 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
COL3A1P02461 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 AL049779.2-201ENST00000553847 315 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC008814.1-201ENST00000603797 406 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 AL356608.1-201ENST00000610034 820 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 MIR6133-201ENST00000617057 108 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AP002505.2-201ENST00000623585 696 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AC073869.8-201ENST00000641806 335 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL3A1P02461 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC7.16□□□□□ -1.26
COL3A1P02461 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC7.16□□□□□ -1.26
COL3A1P02461 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
COL3A1P02461 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL3A1P02461 LCOR-201ENST00000286067 4542 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL3A1P02461 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC7.16□□□□□ -1.26
COL3A1P02461 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC7.16□□□□□ -1.26
COL3A1P02461 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC7.16□□□□□ -1.26
COL3A1P02461 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL3A1P02461 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC7.16□□□□□ -1.26
COL3A1P02461 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL3A1P02461 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC7.16□□□□□ -1.26
COL3A1P02461 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.16□□□□□ -1.26
COL3A1P02461 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL3A1P02461 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC7.16□□□□□ -1.26
COL3A1P02461 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC7.16□□□□□ -1.26
COL3A1P02461 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
COL3A1P02461 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC7.16□□□□□ -1.26
COL3A1P02461 SLC35E1P1-201ENST00000419313 864 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL3A1P02461 NDUFB4P8-201ENST00000435351 367 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 AC092754.1-201ENST00000472975 479 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 AC093763.2-201ENST00000505334 1223 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 SCARNA16.4-201ENST00000516956 187 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC7.16□□□□□ -1.26
COL3A1P02461 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC7.16□□□□□ -1.26
COL3A1P02461 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC7.16□□□□□ -1.26
COL3A1P02461 ARL6IP1P3-201ENST00000524544 560 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 YWHABP2-201ENST00000540201 713 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC7.16□□□□□ -1.26
COL3A1P02461 AC008536.1-201ENST00000602872 669 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 AP000720.1-201ENST00000625091 483 ntBASIC7.16□□□□□ -1.26
COL3A1P02461 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC7.16□□□□□ -1.26
COL3A1P02461 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC7.16□□□□□ -1.26
COL3A1P02461 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL3A1P02461 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL3A1P02461 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
COL3A1P02461 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms