Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL009179.1-201ENST00000406085 265 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 RPSAP35-201ENST00000413753 818 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 AC007161.1-204ENST00000423039 460 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 OR10T1P-201ENST00000424327 947 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 RPS23P9-201ENST00000448848 438 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 RANP1-206ENST00000455094 651 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 AC135999.1-201ENST00000478962 479 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 AL136038.1-201ENST00000497246 351 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 OR5D2P-201ENST00000524390 911 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 AL049767.1-202ENST00000637826 242 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 OR4F13P-202ENST00000560066 2054 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 MT-RNR2-201ENST00000387347 1559 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 CDY11P-201ENST00000447168 1651 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AL137141.1-201ENST00000624622 4836 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 RNA5SP132-201ENST00000364725 118 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC092642.1-201ENST00000392417 425 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 NPM1P38-201ENST00000403835 865 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 DNAJC19P5-201ENST00000443295 316 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC092106.1-201ENST00000444291 373 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 SNORD125-201ENST00000459538 96 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 RPL35AP19-201ENST00000469425 329 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 RPL5P12-201ENST00000477071 851 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 RN7SKP5-201ENST00000517045 272 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC122688.1-201ENST00000541494 223 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC009962.1-201ENST00000567327 3813 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC015720.2-201ENST00000567709 334 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC132068.1-201ENST00000623805 459 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC232271.1-201ENST00000602455 2715 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 CASC19-255ENST00000641733 1385 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 AC087516.1-201ENST00000561236 2428 ntBASIC5.63□□□□□ -1.51
LHX3Q9UBR4 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LHX3Q9UBR4 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC079355.1-201ENST00000421770 223 ntBASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AL121776.1-201ENST00000429337 372 ntBASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 OR5AM1P-201ENST00000532136 1032 ntBASIC5.62□□□□□ -1.51
LHX3Q9UBR4 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms