Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC079922.1-201ENST00000443291 359 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 RAB28P2-201ENST00000454299 641 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 NFU1-207ENST00000462320 558 ntTSL 4 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 TPM3P3-201ENST00000521343 354 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC051619.2-201ENST00000559063 397 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 MIR4505-201ENST00000582238 73 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AP001357.1-201ENST00000586304 1053 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 FO393422.1-201ENST00000603908 708 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC104820.1-201ENST00000624183 307 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AL691477.1-201ENST00000624398 162 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC097655.1-201ENST00000635075 318 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC091948.2-201ENST00000636510 279 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC087565.3-203ENST00000641018 837 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 CR788268.1-201ENST00000603931 1809 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC092692.1-201ENST00000623625 2595 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AP002512.4-202ENST00000641599 4530 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC109446.4-201ENST00000623235 2755 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC092451.3-201ENST00000625067 1343 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 RNA5SP46-201ENST00000362370 120 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 RN7SKP29-201ENST00000410957 272 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC016769.2-201ENST00000414815 475 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AL354868.1-201ENST00000417077 482 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AL662874.1-201ENST00000426065 230 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 EEF1B2P6-201ENST00000445713 673 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 TPRKBP1-201ENST00000456243 481 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 RN7SL466P-201ENST00000497546 295 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC074087.1-201ENST00000512059 724 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC013244.1-201ENST00000604279 193 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 BX322635.1-201ENST00000605804 496 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AC026979.4-201ENST00000606555 645 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AL139022.2-201ENST00000606934 443 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AP000864.1-201ENST00000609424 650 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 RN7SL544P-201ENST00000617232 284 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 RN7SL763P-201ENST00000620922 284 ntBASIC6.09□□□□□ -1.43
EBF3Q9H4W6 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
EBF3Q9H4W6 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
EBF3Q9H4W6 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.09□□□□□ -1.44
EBF3Q9H4W6 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.44
EBF3Q9H4W6 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
EBF3Q9H4W6 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
EBF3Q9H4W6 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.09□□□□□ -1.44
EBF3Q9H4W6 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
EBF3Q9H4W6 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
EBF3Q9H4W6 AL121768.1-201ENST00000613917 2544 ntBASIC6.08□□□□□ -1.44
EBF3Q9H4W6 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
EBF3Q9H4W6 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
EBF3Q9H4W6 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
EBF3Q9H4W6 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.08□□□□□ -1.44
EBF3Q9H4W6 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
EBF3Q9H4W6 AC233968.1-201ENST00000611212 1300 ntBASIC6.08□□□□□ -1.44
EBF3Q9H4W6 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms