Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC023818.1-201ENST00000498379 384 ntBASIC7.09□□□□□ -1.27
COL18A1P39060 RPS4XP20-201ENST00000505751 772 ntBASIC7.09□□□□□ -1.27
COL18A1P39060 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC7.09□□□□□ -1.27
COL18A1P39060 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC7.09□□□□□ -1.27
COL18A1P39060 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC7.09□□□□□ -1.27
COL18A1P39060 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
COL18A1P39060 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL18A1P39060 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
COL18A1P39060 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
COL18A1P39060 MIR192-201ENST00000384915 110 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 CHMP1B2P-201ENST00000399581 597 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC7.08□□□□□ -1.28
COL18A1P39060 RPS4XP16-201ENST00000427198 791 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 KRT8P51-201ENST00000438938 274 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC7.08□□□□□ -1.28
COL18A1P39060 AC122688.1-201ENST00000541494 223 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 PDCD6IPP2-207ENST00000566321 1069 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC7.08□□□□□ -1.28
COL18A1P39060 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL18A1P39060 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL18A1P39060 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC7.08□□□□□ -1.28
COL18A1P39060 CAST-202ENST00000325674 3356 ntTSL 5 BASIC7.08□□□□□ -1.28
COL18A1P39060 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL18A1P39060 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
COL18A1P39060 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL18A1P39060 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL18A1P39060 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL18A1P39060 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC7.08□□□□□ -1.28
COL18A1P39060 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC7.08□□□□□ -1.28
COL18A1P39060 AL138878.2-201ENST00000440581 1241 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC7.08□□□□□ -1.28
COL18A1P39060 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC7.08□□□□□ -1.28
COL18A1P39060 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC7.08□□□□□ -1.28
COL18A1P39060 BTF3P13-201ENST00000513224 490 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC7.08□□□□□ -1.28
COL18A1P39060 GMFG-202ENST00000594700 397 ntTSL 2 BASIC7.08□□□□□ -1.28
COL18A1P39060 AC009597.2-201ENST00000604659 592 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 AL356752.1-201ENST00000615844 593 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 AP000346.3-201ENST00000622821 210 ntBASIC7.08□□□□□ -1.28
COL18A1P39060 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL18A1P39060 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL18A1P39060 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC7.07□□□□□ -1.28
COL18A1P39060 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL18A1P39060 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC7.07□□□□□ -1.28
COL18A1P39060 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL18A1P39060 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL18A1P39060 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC7.07□□□□□ -1.28
COL18A1P39060 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL18A1P39060 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL18A1P39060 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
COL18A1P39060 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
COL18A1P39060 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL18A1P39060 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC7.07□□□□□ -1.28
COL18A1P39060 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL18A1P39060 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
COL18A1P39060 AC114774.1-201ENST00000507410 1770 ntBASIC7.07□□□□□ -1.28
COL18A1P39060 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL18A1P39060 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL18A1P39060 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
COL18A1P39060 AC245028.1-201ENST00000423259 256 ntBASIC7.07□□□□□ -1.28
COL18A1P39060 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC7.07□□□□□ -1.28
COL18A1P39060 IGBP1P3-201ENST00000447449 1000 ntBASIC7.07□□□□□ -1.28
COL18A1P39060 AL513533.1-201ENST00000453728 415 ntBASIC7.07□□□□□ -1.28
COL18A1P39060 snoU13.20-201ENST00000459180 104 ntBASIC7.07□□□□□ -1.28
COL18A1P39060 SNORD125-201ENST00000459538 96 ntBASIC7.07□□□□□ -1.28
COL18A1P39060 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC7.07□□□□□ -1.28
COL18A1P39060 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
COL18A1P39060 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC7.07□□□□□ -1.28
COL18A1P39060 AC005000.1-201ENST00000536192 288 ntBASIC7.07□□□□□ -1.28
COL18A1P39060 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC7.07□□□□□ -1.28
COL18A1P39060 AL031320.1-201ENST00000604177 357 ntBASIC7.07□□□□□ -1.28
COL18A1P39060 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC7.07□□□□□ -1.28
COL18A1P39060 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC7.06□□□□□ -1.28
COL18A1P39060 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL18A1P39060 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL18A1P39060 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC7.06□□□□□ -1.28
COL18A1P39060 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC7.06□□□□□ -1.28
COL18A1P39060 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL18A1P39060 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL18A1P39060 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC7.06□□□□□ -1.28
COL18A1P39060 AC068790.4-201ENST00000602474 263 ntBASIC7.06□□□□□ -1.28
COL18A1P39060 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL18A1P39060 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL18A1P39060 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC7.06□□□□□ -1.28
COL18A1P39060 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC7.06□□□□□ -1.28
COL18A1P39060 EPS15P1-202ENST00000459691 2071 ntBASIC7.06□□□□□ -1.28
COL18A1P39060 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL18A1P39060 AC011933.2-201ENST00000578539 2790 ntBASIC7.06□□□□□ -1.28
COL18A1P39060 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL18A1P39060 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
COL18A1P39060 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC7.05□□□□□ -1.28
COL18A1P39060 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC7.05□□□□□ -1.28
COL18A1P39060 RNA5SP428-201ENST00000365129 132 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC7.05□□□□□ -1.28
COL18A1P39060 AC093414.1-201ENST00000434712 514 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 AC073648.4-201ENST00000442655 781 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC7.05□□□□□ -1.28
COL18A1P39060 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms