Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.3□□□□□ -1.56
SDC1P18827 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.3□□□□□ -1.56
SDC1P18827 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.3□□□□□ -1.56
SDC1P18827 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.3□□□□□ -1.56
SDC1P18827 TRIM77BP-201ENST00000524985 1119 ntBASIC5.3□□□□□ -1.56
SDC1P18827 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.3□□□□□ -1.56
SDC1P18827 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 MIR6780B-201ENST00000610307 79 ntBASIC5.3□□□□□ -1.56
SDC1P18827 AC025574.2-201ENST00000615621 514 ntBASIC5.3□□□□□ -1.56
SDC1P18827 AC022960.2-201ENST00000616300 666 ntBASIC5.3□□□□□ -1.56
SDC1P18827 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.3□□□□□ -1.56
SDC1P18827 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.3□□□□□ -1.56
SDC1P18827 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.3□□□□□ -1.56
SDC1P18827 AC087565.3-203ENST00000641018 837 ntBASIC5.3□□□□□ -1.56
SDC1P18827 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SDC1P18827 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.3□□□□□ -1.56
SDC1P18827 AP001029.2-203ENST00000589795 4910 ntBASIC5.3□□□□□ -1.56
SDC1P18827 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
SDC1P18827 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
SDC1P18827 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.3□□□□□ -1.56
SDC1P18827 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
SDC1P18827 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.29□□□□□ -1.56
SDC1P18827 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.29□□□□□ -1.56
SDC1P18827 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.29□□□□□ -1.56
SDC1P18827 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SDC1P18827 MIR133A2-201ENST00000347538 102 ntBASIC5.29□□□□□ -1.56
SDC1P18827 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.29□□□□□ -1.56
SDC1P18827 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 SNORD56.6-201ENST00000384569 71 ntBASIC5.29□□□□□ -1.56
SDC1P18827 AC245060.4-201ENST00000413293 1121 ntBASIC5.29□□□□□ -1.56
SDC1P18827 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.29□□□□□ -1.56
SDC1P18827 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.29□□□□□ -1.56
SDC1P18827 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC5.29□□□□□ -1.56
SDC1P18827 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.29□□□□□ -1.56
SDC1P18827 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.29□□□□□ -1.56
SDC1P18827 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC5.29□□□□□ -1.56
SDC1P18827 SEPT14P1-201ENST00000458703 648 ntBASIC5.29□□□□□ -1.56
SDC1P18827 UBFD1P1-201ENST00000473259 814 ntBASIC5.29□□□□□ -1.56
SDC1P18827 RNA5SP473-201ENST00000516402 125 ntBASIC5.29□□□□□ -1.56
SDC1P18827 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.29□□□□□ -1.56
SDC1P18827 OR4A43P-201ENST00000532938 908 ntBASIC5.29□□□□□ -1.56
SDC1P18827 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.29□□□□□ -1.56
SDC1P18827 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.29□□□□□ -1.56
SDC1P18827 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.29□□□□□ -1.56
SDC1P18827 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.29□□□□□ -1.56
SDC1P18827 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.29□□□□□ -1.56
SDC1P18827 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.29□□□□□ -1.56
SDC1P18827 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.29□□□□□ -1.56
SDC1P18827 AC009779.8-202ENST00000607990 932 ntBASIC5.29□□□□□ -1.56
SDC1P18827 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.29□□□□□ -1.56
SDC1P18827 AC244100.4-201ENST00000617747 388 ntBASIC5.29□□□□□ -1.56
SDC1P18827 AC073593.1-201ENST00000624500 411 ntBASIC5.29□□□□□ -1.56
SDC1P18827 AL390318.1-201ENST00000624564 687 ntBASIC5.29□□□□□ -1.56
SDC1P18827 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.29□□□□□ -1.56
SDC1P18827 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
SDC1P18827 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.29□□□□□ -1.56
SDC1P18827 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.29□□□□□ -1.56
SDC1P18827 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDC1P18827 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SDC1P18827 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
SDC1P18827 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SDC1P18827 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
SDC1P18827 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.28□□□□□ -1.56
SDC1P18827 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SDC1P18827 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SDC1P18827 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SDC1P18827 AC100757.1-201ENST00000616872 1835 ntBASIC5.28□□□□□ -1.56
SDC1P18827 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.28□□□□□ -1.56
SDC1P18827 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.28□□□□□ -1.56
SDC1P18827 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.28□□□□□ -1.56
SDC1P18827 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.28□□□□□ -1.56
SDC1P18827 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
SDC1P18827 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.28□□□□□ -1.56
SDC1P18827 RNA5SP433-201ENST00000364491 114 ntBASIC5.28□□□□□ -1.56
SDC1P18827 NPM1P38-201ENST00000403835 865 ntBASIC5.28□□□□□ -1.56
SDC1P18827 PPIAP9-201ENST00000403866 498 ntBASIC5.28□□□□□ -1.56
SDC1P18827 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.28□□□□□ -1.56
SDC1P18827 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.28□□□□□ -1.56
SDC1P18827 AC117434.1-201ENST00000419971 836 ntBASIC5.28□□□□□ -1.56
SDC1P18827 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.28□□□□□ -1.56
SDC1P18827 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.28□□□□□ -1.56
SDC1P18827 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.28□□□□□ -1.56
SDC1P18827 NFYAP1-201ENST00000431953 972 ntBASIC5.28□□□□□ -1.56
SDC1P18827 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SDC1P18827 NPM1P48-201ENST00000436002 853 ntBASIC5.28□□□□□ -1.56
SDC1P18827 AL358876.1-201ENST00000453364 1075 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms