Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
COL6A1P12109 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
COL6A1P12109 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
COL6A1P12109 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
COL6A1P12109 AP002530.1-201ENST00000405705 684 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC6.95□□□□□ -1.3
COL6A1P12109 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 AC008753.1-201ENST00000423096 284 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC6.95□□□□□ -1.3
COL6A1P12109 NANOGP4-201ENST00000427230 913 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC6.95□□□□□ -1.3
COL6A1P12109 DEFA9P-201ENST00000433042 285 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 USP9YP28-201ENST00000435142 589 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AL138787.1-202ENST00000437804 898 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC6.95□□□□□ -1.3
COL6A1P12109 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC6.95□□□□□ -1.3
COL6A1P12109 RN7SL610P-201ENST00000463845 291 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 RN7SL423P-201ENST00000486202 304 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.95□□□□□ -1.3
COL6A1P12109 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC6.95□□□□□ -1.3
COL6A1P12109 ATG10-208ENST00000513634 618 ntTSL 2 BASIC6.95□□□□□ -1.3
COL6A1P12109 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC6.95□□□□□ -1.3
COL6A1P12109 RNA5SP34-201ENST00000516887 130 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC6.95□□□□□ -1.3
COL6A1P12109 IGLV2-28-201ENST00000520681 304 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AC010376.1-201ENST00000522101 334 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AP005639.1-201ENST00000526939 192 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
COL6A1P12109 AP001858.2-201ENST00000536213 601 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC6.95□□□□□ -1.3
COL6A1P12109 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC6.95□□□□□ -1.3
COL6A1P12109 AC091078.2-201ENST00000557145 559 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC6.95□□□□□ -1.3
COL6A1P12109 AC145350.1-201ENST00000567426 208 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AC008088.1-201ENST00000580993 280 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AC068790.2-201ENST00000602601 557 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AC008759.3-201ENST00000613300 508 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AL137246.2-201ENST00000613439 662 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AC016769.4-201ENST00000616893 535 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AC118658.2-201ENST00000618697 459 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 AP003485.2-201ENST00000623636 610 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
COL6A1P12109 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 AC011455.2-201ENST00000599320 3336 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 MAPK10-261ENST00000641050 3109 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC6.95□□□□□ -1.3
COL6A1P12109 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.95□□□□□ -1.3
COL6A1P12109 EEF1A1P14-201ENST00000421195 1376 ntBASIC6.95□□□□□ -1.3
COL6A1P12109 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.94□□□□□ -1.3
COL6A1P12109 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 AC022819.1-201ENST00000563495 3910 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.94□□□□□ -1.3
COL6A1P12109 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.94□□□□□ -1.3
COL6A1P12109 AL132875.1-201ENST00000403623 949 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC6.94□□□□□ -1.3
COL6A1P12109 AL713922.1-201ENST00000416477 747 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC6.94□□□□□ -1.3
COL6A1P12109 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC6.94□□□□□ -1.3
COL6A1P12109 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC6.94□□□□□ -1.3
COL6A1P12109 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC6.94□□□□□ -1.3
COL6A1P12109 NPM1P22-201ENST00000427761 952 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 ATP5C1P1-201ENST00000441945 895 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 SETD6P1-201ENST00000444575 317 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.94□□□□□ -1.3
COL6A1P12109 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.94□□□□□ -1.3
COL6A1P12109 RN7SL834P-201ENST00000461450 286 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 AC012123.2-201ENST00000485809 248 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 AC231760.1-201ENST00000498002 260 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL6A1P12109 MTND1P22-201ENST00000510572 951 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 AC109464.1-201ENST00000511091 819 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC6.94□□□□□ -1.3
COL6A1P12109 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC6.94□□□□□ -1.3
COL6A1P12109 MTCO1P47-201ENST00000523889 1271 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.94□□□□□ -1.3
COL6A1P12109 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.94□□□□□ -1.3
COL6A1P12109 DUX4L52-201ENST00000549363 777 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.94□□□□□ -1.3
COL6A1P12109 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC6.94□□□□□ -1.3
COL6A1P12109 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.94□□□□□ -1.3
COL6A1P12109 AL158062.1-201ENST00000619632 745 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 AC095038.2-201ENST00000621464 1070 ntBASIC6.94□□□□□ -1.3
COL6A1P12109 AC015660.5-201ENST00000623238 564 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms