Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL3A1P02461 AC079097.1-201ENST00000512187 1399 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL3A1P02461 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC7.21□□□□□ -1.26
COL3A1P02461 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC7.2□□□□□ -1.26
COL3A1P02461 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL3A1P02461 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC7.2□□□□□ -1.26
COL3A1P02461 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL3A1P02461 AC006600.2-201ENST00000624834 2506 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
COL3A1P02461 RNU1-149P-201ENST00000390870 161 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 AL133325.1-201ENST00000421090 382 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 AL139148.1-201ENST00000427122 680 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC7.2□□□□□ -1.26
COL3A1P02461 RPS21P4-201ENST00000487122 248 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 SUMO2P19-201ENST00000518920 295 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 AC022784.5-201ENST00000522241 437 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC7.2□□□□□ -1.26
COL3A1P02461 HMGB1P40-201ENST00000525121 540 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC7.2□□□□□ -1.26
COL3A1P02461 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC7.2□□□□□ -1.26
COL3A1P02461 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC7.2□□□□□ -1.26
COL3A1P02461 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL3A1P02461 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC7.2□□□□□ -1.26
COL3A1P02461 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
COL3A1P02461 AC126915.2-201ENST00000610957 190 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC7.2□□□□□ -1.26
COL3A1P02461 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL3A1P02461 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC7.2□□□□□ -1.26
COL3A1P02461 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC7.2□□□□□ -1.26
COL3A1P02461 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL3A1P02461 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL3A1P02461 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL3A1P02461 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC7.2□□□□□ -1.26
COL3A1P02461 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
COL3A1P02461 AC114774.1-201ENST00000507410 1770 ntBASIC7.2□□□□□ -1.26
COL3A1P02461 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL3A1P02461 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC7.19□□□□□ -1.26
COL3A1P02461 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC7.19□□□□□ -1.26
COL3A1P02461 AC013470.3-201ENST00000420252 1194 ntBASIC7.19□□□□□ -1.26
COL3A1P02461 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.19□□□□□ -1.26
COL3A1P02461 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC7.19□□□□□ -1.26
COL3A1P02461 TAAR4P-201ENST00000454843 1039 ntBASIC7.19□□□□□ -1.26
COL3A1P02461 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC7.19□□□□□ -1.26
COL3A1P02461 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC7.19□□□□□ -1.26
COL3A1P02461 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC7.19□□□□□ -1.26
COL3A1P02461 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC7.19□□□□□ -1.26
COL3A1P02461 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC7.19□□□□□ -1.26
COL3A1P02461 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.19□□□□□ -1.26
COL3A1P02461 AP005432.2-201ENST00000608162 586 ntBASIC7.19□□□□□ -1.26
COL3A1P02461 MIR6837-201ENST00000620884 64 ntBASIC7.19□□□□□ -1.26
COL3A1P02461 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC7.19□□□□□ -1.26
COL3A1P02461 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC7.19□□□□□ -1.26
COL3A1P02461 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL3A1P02461 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL3A1P02461 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC7.19□□□□□ -1.26
COL3A1P02461 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL3A1P02461 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL3A1P02461 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL3A1P02461 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC7.19□□□□□ -1.26
COL3A1P02461 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL3A1P02461 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL3A1P02461 AC005294.1-201ENST00000355509 281 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
COL3A1P02461 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC7.18□□□□□ -1.26
COL3A1P02461 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.18□□□□□ -1.26
COL3A1P02461 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC7.18□□□□□ -1.26
COL3A1P02461 AC073465.2-201ENST00000440938 498 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 RN7SL172P-201ENST00000460535 303 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.18□□□□□ -1.26
COL3A1P02461 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC7.18□□□□□ -1.26
COL3A1P02461 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC7.18□□□□□ -1.26
COL3A1P02461 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL3A1P02461 AL355816.2-201ENST00000610049 647 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 AC010632.3-201ENST00000611377 369 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 AC244107.2-201ENST00000611773 76 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 AL139407.1-201ENST00000613826 1175 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 AC020658.4-201ENST00000613987 684 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 AL118556.2-201ENST00000614375 824 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC7.18□□□□□ -1.26
COL3A1P02461 C4BPAP1-201ENST00000415474 1893 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
COL3A1P02461 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC7.18□□□□□ -1.26
COL3A1P02461 EPS15P1-202ENST00000459691 2071 ntBASIC7.18□□□□□ -1.26
COL3A1P02461 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC7.18□□□□□ -1.26
COL3A1P02461 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC7.18□□□□□ -1.26
COL3A1P02461 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
COL3A1P02461 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC7.18□□□□□ -1.26
COL3A1P02461 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL3A1P02461 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL3A1P02461 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL3A1P02461 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL3A1P02461 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC7.17□□□□□ -1.26
COL3A1P02461 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
COL3A1P02461 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
COL3A1P02461 U8.4-201ENST00000363626 134 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL3A1P02461 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
COL3A1P02461 AC021876.1-201ENST00000425959 359 ntBASIC7.17□□□□□ -1.26
COL3A1P02461 AC005033.1-201ENST00000428904 813 ntBASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms