Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DNAJB5P1-201ENST00000454004 806 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AC023818.1-201ENST00000498379 384 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AC105384.2-201ENST00000508433 640 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AC013701.1-201ENST00000522657 465 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 RPL10P14-201ENST00000565265 298 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 MRPS21P7-201ENST00000566937 238 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AP000866.6-201ENST00000638898 3579 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AC010435.1-201ENST00000623353 1177 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AP003072.5-201ENST00000623872 773 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 AL589993.1-201ENST00000407450 2524 ntBASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 AC006466.1-201ENST00000438721 289 ntBASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 AL445687.2-201ENST00000458156 728 ntBASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC10.73□□□□□ -0.69
SHROOM4Q9ULL8 KCNMB3P1-202ENST00000493696 3389 ntBASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 RN7SKP28-201ENST00000364770 305 ntBASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 AL360271.1-201ENST00000395679 510 ntBASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 CYB5AP4-201ENST00000396692 399 ntBASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 U3.36-201ENST00000408418 213 ntBASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 AC126615.2-201ENST00000553003 515 ntBASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 AL683813.2-201ENST00000605245 502 ntBASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 AC009948.3-201ENST00000603415 1798 ntBASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
SHROOM4Q9ULL8 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 AC010132.2-201ENST00000295493 1043 ntBASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 RN7SKP104-201ENST00000362605 328 ntBASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 AC019205.1-201ENST00000421830 730 ntBASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 AL022394.1-201ENST00000606979 292 ntBASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 AC000068.2-201ENST00000608816 460 ntBASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
SHROOM4Q9ULL8 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC10.71□□□□□ -0.7
SHROOM4Q9ULL8 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC10.71□□□□□ -0.7
SHROOM4Q9ULL8 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC10.71□□□□□ -0.7
SHROOM4Q9ULL8 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC10.71□□□□□ -0.7
SHROOM4Q9ULL8 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
SHROOM4Q9ULL8 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
SHROOM4Q9ULL8 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
SHROOM4Q9ULL8 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 ADIG-201ENST00000373348 430 ntTSL 2 BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 SNRPCP2-201ENST00000504370 475 ntBASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 TOMM22P4-201ENST00000511318 336 ntBASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 IGLV3-24-201ENST00000517477 197 ntBASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 AL049779.3-201ENST00000557141 606 ntBASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms