Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 MIR3682-201ENST00000581338 84 ntBASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 RPL27-207ENST00000590864 569 ntTSL 2 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 AC091488.1-201ENST00000604239 660 ntBASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 SUGT1P3-202ENST00000604259 383 ntBASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 AL121936.2-201ENST00000641935 662 ntBASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 ERV3-1-201ENST00000394323 2719 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 WDR11-AS1-203ENST00000598981 2242 ntTSL 5 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 AC007996.1-201ENST00000620414 2821 ntBASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 DGKG-203ENST00000382164 3152 ntTSL 5 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 CDK15-202ENST00000410091 1780 ntAPPRIS P3 TSL 2 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 EIF4BP5-201ENST00000567338 1795 ntBASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC8.1□□□□□ -1.11
LIMD1Q9UGP4 TNFRSF19-204ENST00000403372 4277 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 A2ML1-205ENST00000539547 3460 ntTSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 LINC02035-201ENST00000610128 5476 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 R3HCC1L-203ENST00000370584 3372 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 MYRFL-203ENST00000547771 3465 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 SMAD5-AS1-201ENST00000297163 1816 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 Y_RNA.97-201ENST00000363094 102 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 RNU6-216P-201ENST00000363282 104 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 Y_RNA.279-201ENST00000364763 95 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 RNU6-780P-201ENST00000391030 104 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 PGAM1P3-201ENST00000420790 565 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AL953862.1-201ENST00000423016 168 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AL034379.1-201ENST00000423216 253 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC073335.1-201ENST00000427776 363 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 NDUFA5P4-201ENST00000436704 385 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 OR7A15P-201ENST00000449848 1009 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 RPL26P28-201ENST00000451325 435 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 OR52E7P-201ENST00000452394 933 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC023598.1-201ENST00000472521 361 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 RPS29P25-201ENST00000481709 171 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 ZNF695-204ENST00000487338 826 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 RN7SL516P-201ENST00000496127 297 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC098799.3-201ENST00000506095 438 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC016559.1-201ENST00000511420 199 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 KCTD9P2-201ENST00000512203 1013 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 EGLN3P1-201ENST00000541727 720 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 SNORD39.2-201ENST00000579995 76 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 PRR13P5-201ENST00000596581 442 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC073091.2-201ENST00000603205 907 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC012510.1-201ENST00000607946 759 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 5S_rRNA.20-201ENST00000612104 118 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC090574.1-201ENST00000623186 233 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AC243725.1-201ENST00000637164 436 ntBASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 CKAP2L-201ENST00000302450 4533 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 CRB1-210ENST00000538660 3397 ntTSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 PARN-201ENST00000341484 2100 ntTSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 CAST-236ENST00000511782 2466 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 SLC6A2-206ENST00000567238 3160 ntTSL 2 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 TRIM5-201ENST00000380027 2290 ntTSL 5 BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 ANGPT2-204ENST00000629816 2602 ntAPPRIS ALT1 TSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 GIMAP8-201ENST00000307271 4184 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
LIMD1Q9UGP4 AL354854.1-201ENST00000455940 1363 ntBASIC8.09□□□□□ -1.12
LIMD1Q9UGP4 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC8.09□□□□□ -1.12
LIMD1Q9UGP4 GOLGA8B-202ENST00000438958 4252 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.12
LIMD1Q9UGP4 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC8.09□□□□□ -1.12
LIMD1Q9UGP4 OR2V2-203ENST00000641791 4428 ntAPPRIS P1 BASIC8.09□□□□□ -1.12
LIMD1Q9UGP4 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC021242.1-201ENST00000507315 2035 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms