Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 EXOSC3P1-201ENST00000448649 500 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC6.43□□□□□ -1.38
USP39Q53GS9 USP9YP10-201ENST00000454868 628 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 MTND2P28-201ENST00000457540 1044 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 NXT1P1-201ENST00000458481 316 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 AC022206.1-201ENST00000495947 347 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AC010468.3-201ENST00000508225 458 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 USP9YP5-201ENST00000511770 630 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AC105233.3-201ENST00000531125 744 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC6.43□□□□□ -1.38
USP39Q53GS9 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 MIR4301-201ENST00000577203 66 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.43□□□□□ -1.38
USP39Q53GS9 MIR4701-201ENST00000583094 63 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 AC100767.2-201ENST00000604840 693 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 KATNBL1P5-201ENST00000605015 517 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AC021755.4-201ENST00000616620 456 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AP001264.1-201ENST00000620602 703 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.43□□□□□ -1.38
USP39Q53GS9 SNORA17.5-201ENST00000630429 132 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AC132825.8-201ENST00000640783 297 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 OR7E91P-202ENST00000642062 1198 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
USP39Q53GS9 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 Z98755.1-201ENST00000407015 1384 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.42□□□□□ -1.38
USP39Q53GS9 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 AL353743.3-201ENST00000442109 1468 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
USP39Q53GS9 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
USP39Q53GS9 MAPK10-261ENST00000641050 3109 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AL731556.1-201ENST00000394628 3711 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
USP39Q53GS9 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.42□□□□□ -1.38
USP39Q53GS9 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 RNU5E-10P-201ENST00000363506 118 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 CD2-201ENST00000369477 478 ntTSL 2 BASIC6.42□□□□□ -1.38
USP39Q53GS9 SUGT1P2-201ENST00000379452 992 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AL356057.1-202ENST00000402263 756 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 MTND2P18-201ENST00000419962 1030 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 TCEA1P2-201ENST00000420496 906 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 RPL23AP85-201ENST00000421838 433 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AL157884.1-201ENST00000424561 454 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC6.42□□□□□ -1.38
USP39Q53GS9 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
USP39Q53GS9 AC013410.1-201ENST00000436223 1232 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 SOCS5P1-201ENST00000440415 949 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AC073109.1-201ENST00000445066 978 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AL590004.3-202ENST00000445883 451 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 RPL31P15-201ENST00000449770 338 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.42□□□□□ -1.38
USP39Q53GS9 RN7SL174P-201ENST00000475578 289 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AC004263.1-201ENST00000479327 332 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AC093719.1-201ENST00000480427 441 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC6.42□□□□□ -1.38
USP39Q53GS9 PPIAP19-201ENST00000486414 492 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 LAMTOR3P2-201ENST00000504479 232 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.42□□□□□ -1.38
USP39Q53GS9 AC060775.1-201ENST00000518241 520 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 IGKV3D-25-201ENST00000519599 235 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 IGHV4-55-201ENST00000520889 368 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.42□□□□□ -1.38
USP39Q53GS9 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.42□□□□□ -1.38
USP39Q53GS9 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.42□□□□□ -1.38
USP39Q53GS9 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms