Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RLIMP2-201ENST00000427891 1563 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC005005.4-201ENST00000623789 16698 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AL031595.2-201ENST00000624215 19071 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 PPIAP24-201ENST00000328558 471 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 RNU6-697P-201ENST00000363348 107 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 RNU6-883P-201ENST00000384597 107 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 RPL12P23-201ENST00000405880 490 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 RNU2-72P-201ENST00000411175 163 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AL035422.1-201ENST00000414193 397 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC015977.1-201ENST00000418887 292 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 SETP10-201ENST00000424368 814 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 CR848007.2-201ENST00000424918 787 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AL163193.1-201ENST00000444895 788 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 RN7SL717P-201ENST00000478343 297 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 RPL32P9-201ENST00000487963 407 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC022206.1-201ENST00000495947 347 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 HMGN1P17-201ENST00000513734 295 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 IGKV2-18-201ENST00000522607 343 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 MIR4489-201ENST00000578869 62 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AL008723.3-201ENST00000608926 449 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 WBP1LP8-201ENST00000617401 327 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC024884.1-201ENST00000620583 399 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 FO681491.1-202ENST00000623392 737 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC114876.1-201ENST00000490962 1366 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC027279.1-201ENST00000568885 4284 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AL606537.1-201ENST00000607258 2011 ntBASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PDLIM3Q53GG5 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 RNU6-670P-201ENST00000364312 104 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 GNG5P2-201ENST00000372054 207 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 CCNT2P1-201ENST00000423082 1315 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 AC016027.5-201ENST00000427227 210 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 NANOGP4-201ENST00000427230 913 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 NPM1P22-201ENST00000427761 952 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 AL627308.1-201ENST00000435693 821 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 AL590762.3-201ENST00000436372 640 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 AL353743.3-201ENST00000442109 1468 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 CYCSP53-201ENST00000455540 265 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 RARRES2P3-201ENST00000457739 473 ntBASIC5.1□□□□□ -1.59
PDLIM3Q53GG5 RPL12P31-201ENST00000478433 450 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms