Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SOX4Q06945 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC7.21□□□□□ -1.26
SOX4Q06945 MGAT2P2-201ENST00000427194 797 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC7.21□□□□□ -1.26
SOX4Q06945 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC7.21□□□□□ -1.26
SOX4Q06945 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 COL11A2P1-205ENST00000441798 676 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SOX4Q06945 AC245291.3-201ENST00000443400 292 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 MTCYBP42-201ENST00000444653 1130 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 AP000542.1-201ENST00000448473 371 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 CYCSP42-201ENST00000450823 238 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 AC026348.1-201ENST00000462549 1053 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 RPS7P10-201ENST00000464254 603 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SOX4Q06945 RPL29P23-201ENST00000486188 442 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 GUSBP9-201ENST00000510138 584 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 AL390198.2-201ENST00000510553 222 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 SEPT10P1-201ENST00000517342 1162 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 DUXAP2-201ENST00000519198 589 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC7.21□□□□□ -1.26
SOX4Q06945 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SOX4Q06945 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC7.21□□□□□ -1.26
SOX4Q06945 AC011611.5-201ENST00000552477 578 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC7.21□□□□□ -1.26
SOX4Q06945 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC7.21□□□□□ -1.26
SOX4Q06945 AP001330.5-201ENST00000607176 411 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC7.21□□□□□ -1.26
SOX4Q06945 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC7.21□□□□□ -1.26
SOX4Q06945 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC7.21□□□□□ -1.26
SOX4Q06945 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC7.21□□□□□ -1.26
SOX4Q06945 AC079395.2-201ENST00000610982 737 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 AC016769.4-201ENST00000616893 535 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.26
SOX4Q06945 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SOX4Q06945 MARK2P4-201ENST00000503381 2380 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SOX4Q06945 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SOX4Q06945 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC7.21□□□□□ -1.26
SOX4Q06945 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC7.21□□□□□ -1.26
SOX4Q06945 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.26
SOX4Q06945 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.2□□□□□ -1.26
SOX4Q06945 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC7.2□□□□□ -1.26
SOX4Q06945 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
SOX4Q06945 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
SOX4Q06945 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC7.2□□□□□ -1.26
SOX4Q06945 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
SOX4Q06945 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
SOX4Q06945 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC7.2□□□□□ -1.26
SOX4Q06945 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 RNU6-1119P-201ENST00000384349 108 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 RNU6-932P-201ENST00000391108 106 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
SOX4Q06945 VIM2P-201ENST00000402383 1294 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 RNU2-17P-201ENST00000410290 190 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC7.2□□□□□ -1.26
SOX4Q06945 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC7.2□□□□□ -1.26
SOX4Q06945 IPMKP1-201ENST00000425988 855 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 RAC1P8-201ENST00000427086 527 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 NDUFS5P5-201ENST00000437256 321 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 USP9YP22-201ENST00000438971 294 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 GAPDHP33-201ENST00000443168 1013 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 CRYGGP-201ENST00000443337 145 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC7.2□□□□□ -1.26
SOX4Q06945 AL606662.1-201ENST00000445763 553 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 UBBP5-201ENST00000446970 266 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 VN1R34P-201ENST00000447387 883 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 RPS18P1-201ENST00000447840 458 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 ZNF114P1-201ENST00000453500 292 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 SEPT7P3-201ENST00000455017 621 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 AC026826.1-201ENST00000493002 361 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC7.2□□□□□ -1.26
SOX4Q06945 AC138853.1-201ENST00000503549 823 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 AC093870.1-201ENST00000506837 213 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 AC005178.1-201ENST00000508392 440 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 AC026782.2-201ENST00000510845 636 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC7.2□□□□□ -1.26
SOX4Q06945 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC7.2□□□□□ -1.26
SOX4Q06945 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC7.2□□□□□ -1.26
SOX4Q06945 AC124293.1-201ENST00000530034 493 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC7.2□□□□□ -1.26
SOX4Q06945 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC7.2□□□□□ -1.26
SOX4Q06945 TEX41-218ENST00000596540 882 ntTSL 5 BASIC7.2□□□□□ -1.26
SOX4Q06945 AC090181.2-201ENST00000602975 672 ntBASIC7.2□□□□□ -1.26
SOX4Q06945 AC012175.1-201ENST00000603755 531 ntBASIC7.2□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms