Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
SOX3P41225 AC091078.2-201ENST00000557145 559 ntBASIC5.4□□□□□ -1.54
SOX3P41225 AP000919.1-201ENST00000582850 985 ntBASIC5.4□□□□□ -1.54
SOX3P41225 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SOX3P41225 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.4□□□□□ -1.54
SOX3P41225 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.4□□□□□ -1.54
SOX3P41225 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.4□□□□□ -1.54
SOX3P41225 AC087468.1-201ENST00000604365 630 ntBASIC5.4□□□□□ -1.54
SOX3P41225 AC138473.1-201ENST00000605717 526 ntBASIC5.4□□□□□ -1.54
SOX3P41225 AF117829.2-201ENST00000619538 361 ntBASIC5.4□□□□□ -1.54
SOX3P41225 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.4□□□□□ -1.54
SOX3P41225 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.4□□□□□ -1.54
SOX3P41225 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC5.4□□□□□ -1.54
SOX3P41225 AC103703.1-201ENST00000634783 663 ntBASIC5.4□□□□□ -1.54
SOX3P41225 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SOX3P41225 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
SOX3P41225 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.4□□□□□ -1.55
SOX3P41225 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SOX3P41225 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
SOX3P41225 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
SOX3P41225 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
SOX3P41225 MTCO1P22-201ENST00000604619 1360 ntBASIC5.4□□□□□ -1.55
SOX3P41225 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
SOX3P41225 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.39□□□□□ -1.55
SOX3P41225 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.39□□□□□ -1.55
SOX3P41225 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SOX3P41225 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
SOX3P41225 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.39□□□□□ -1.55
SOX3P41225 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 TMSB4XP4-201ENST00000323496 618 ntBASIC5.39□□□□□ -1.55
SOX3P41225 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.39□□□□□ -1.55
SOX3P41225 MIR375-201ENST00000362103 64 ntBASIC5.39□□□□□ -1.55
SOX3P41225 RNA5SP435-201ENST00000364044 108 ntBASIC5.39□□□□□ -1.55
SOX3P41225 RN7SKP78-201ENST00000364711 318 ntBASIC5.39□□□□□ -1.55
SOX3P41225 RN7SKP292-201ENST00000365522 317 ntBASIC5.39□□□□□ -1.55
SOX3P41225 RN7SKP269-201ENST00000365545 319 ntBASIC5.39□□□□□ -1.55
SOX3P41225 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.39□□□□□ -1.55
SOX3P41225 NPM1P10-201ENST00000398310 865 ntBASIC5.39□□□□□ -1.55
SOX3P41225 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.39□□□□□ -1.55
SOX3P41225 AK4P4-201ENST00000419465 646 ntBASIC5.39□□□□□ -1.55
SOX3P41225 AC009506.2-201ENST00000420635 840 ntBASIC5.39□□□□□ -1.55
SOX3P41225 OR5W1P-201ENST00000423705 938 ntBASIC5.39□□□□□ -1.55
SOX3P41225 NAP1L4P2-201ENST00000425958 899 ntBASIC5.39□□□□□ -1.55
SOX3P41225 DEFA9P-201ENST00000433042 285 ntBASIC5.39□□□□□ -1.55
SOX3P41225 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.39□□□□□ -1.55
SOX3P41225 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.39□□□□□ -1.55
SOX3P41225 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.39□□□□□ -1.55
SOX3P41225 AP002371.1-201ENST00000463604 433 ntBASIC5.39□□□□□ -1.55
SOX3P41225 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 PPIAP19-201ENST00000486414 492 ntBASIC5.39□□□□□ -1.55
SOX3P41225 RPL7P51-201ENST00000490532 749 ntBASIC5.39□□□□□ -1.55
SOX3P41225 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.39□□□□□ -1.55
SOX3P41225 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 MORF4L2P1-201ENST00000503761 858 ntBASIC5.39□□□□□ -1.55
SOX3P41225 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
SOX3P41225 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.39□□□□□ -1.55
SOX3P41225 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.39□□□□□ -1.55
SOX3P41225 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.39□□□□□ -1.55
SOX3P41225 AC090286.3-201ENST00000573133 187 ntBASIC5.39□□□□□ -1.55
SOX3P41225 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.39□□□□□ -1.55
SOX3P41225 AC015802.2-201ENST00000589690 189 ntBASIC5.39□□□□□ -1.55
SOX3P41225 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.39□□□□□ -1.55
SOX3P41225 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.39□□□□□ -1.55
SOX3P41225 AC127024.6-201ENST00000621598 424 ntBASIC5.39□□□□□ -1.55
SOX3P41225 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.39□□□□□ -1.55
SOX3P41225 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.39□□□□□ -1.55
SOX3P41225 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.39□□□□□ -1.55
SOX3P41225 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 KARSP1-201ENST00000451871 1752 ntBASIC5.39□□□□□ -1.55
SOX3P41225 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.39□□□□□ -1.55
SOX3P41225 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX3P41225 AL137141.1-201ENST00000624622 4836 ntBASIC5.39□□□□□ -1.55
SOX3P41225 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX3P41225 AC130304.1-201ENST00000622942 2385 ntBASIC5.38□□□□□ -1.55
SOX3P41225 RNF19BPY-201ENST00000458209 1550 ntBASIC5.38□□□□□ -1.55
SOX3P41225 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
SOX3P41225 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX3P41225 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.38□□□□□ -1.55
SOX3P41225 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX3P41225 BCORP1-203ENST00000513194 5093 ntBASIC5.38□□□□□ -1.55
SOX3P41225 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX3P41225 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SOX3P41225 MIR133A2-201ENST00000347538 102 ntBASIC5.38□□□□□ -1.55
SOX3P41225 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms