Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
MSX2P35548 RNA5SP176-201ENST00000390956 110 ntBASIC6.09□□□□□ -1.43
MSX2P35548 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.09□□□□□ -1.43
MSX2P35548 RAB5CP1-201ENST00000395972 580 ntBASIC6.09□□□□□ -1.43
MSX2P35548 LYPLA1P3-201ENST00000402650 695 ntBASIC6.09□□□□□ -1.43
MSX2P35548 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 NRIR-202ENST00000414795 506 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX2P35548 UBE2V1P14-201ENST00000415815 558 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 USP9YP26-201ENST00000421008 661 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX2P35548 AC092651.1-201ENST00000426110 312 ntBASIC6.09□□□□□ -1.43
MSX2P35548 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX2P35548 AC090018.1-201ENST00000434369 367 ntBASIC6.09□□□□□ -1.43
MSX2P35548 CR391992.1-201ENST00000438601 394 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AL008629.1-201ENST00000438615 184 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX2P35548 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC6.09□□□□□ -1.43
MSX2P35548 AC016772.1-201ENST00000444170 1261 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AC092421.1-201ENST00000448148 418 ntBASIC6.09□□□□□ -1.43
MSX2P35548 RPS27AP3-201ENST00000453803 454 ntBASIC6.09□□□□□ -1.43
MSX2P35548 RPL31P3-201ENST00000458430 332 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX2P35548 AL355032.1-201ENST00000472981 438 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AC018475.1-201ENST00000478358 465 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX2P35548 RPL5P14-201ENST00000494197 878 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 AC024909.2-201ENST00000553035 286 ntBASIC6.09□□□□□ -1.43
MSX2P35548 HNRNPCP1-201ENST00000556181 766 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX2P35548 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX2P35548 MED31-202ENST00000574128 619 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX2P35548 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 MTCO3P22-201ENST00000603219 784 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AL035411.2-201ENST00000604022 421 ntBASIC6.09□□□□□ -1.43
MSX2P35548 AC024060.1-201ENST00000607052 494 ntBASIC6.09□□□□□ -1.43
MSX2P35548 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 AC007671.1-201ENST00000616957 830 ntBASIC6.09□□□□□ -1.43
MSX2P35548 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 AC006927.3-201ENST00000638789 384 ntBASIC6.09□□□□□ -1.43
MSX2P35548 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 PDE4D-210ENST00000503258 2860 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.09□□□□□ -1.44
MSX2P35548 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
MSX2P35548 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.09□□□□□ -1.44
MSX2P35548 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
MSX2P35548 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.09□□□□□ -1.44
MSX2P35548 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
MSX2P35548 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
MSX2P35548 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 AL356473.1-201ENST00000406203 1408 ntBASIC6.08□□□□□ -1.44
MSX2P35548 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 TBC1D19-205ENST00000511789 1386 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 AMELX-201ENST00000348912 737 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 Y_RNA.51-201ENST00000362725 102 ntBASIC6.08□□□□□ -1.44
MSX2P35548 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 AL603865.2-201ENST00000401679 213 ntBASIC6.08□□□□□ -1.44
MSX2P35548 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC6.08□□□□□ -1.44
MSX2P35548 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 RN7SKP137-201ENST00000411074 307 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AC022028.1-201ENST00000412054 408 ntBASIC6.08□□□□□ -1.44
MSX2P35548 RPL12P10-201ENST00000413498 498 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 AL513175.2-201ENST00000422071 443 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AC009303.1-201ENST00000426307 352 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AL035407.1-201ENST00000429211 571 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 BX119904.1-201ENST00000432026 348 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 AC009518.3-201ENST00000438972 253 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AL353803.3-201ENST00000444641 335 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms