Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC078814.3-201ENST00000553036 491 ntBASIC7.17□□□□□ -1.26
MSX1P28360 AC004817.1-201ENST00000553621 721 ntTSL 4 BASIC7.17□□□□□ -1.26
MSX1P28360 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC7.17□□□□□ -1.26
MSX1P28360 OR4F28P-201ENST00000559128 938 ntBASIC7.17□□□□□ -1.26
MSX1P28360 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 AC142086.3-201ENST00000563896 802 ntBASIC7.17□□□□□ -1.26
MSX1P28360 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC7.17□□□□□ -1.26
MSX1P28360 AC133565.1-201ENST00000569218 488 ntTSL 3 BASIC7.17□□□□□ -1.26
MSX1P28360 AC136618.2-201ENST00000575091 400 ntBASIC7.17□□□□□ -1.26
MSX1P28360 AC069061.2-201ENST00000580686 480 ntTSL 3 BASIC7.17□□□□□ -1.26
MSX1P28360 AC090774.2-201ENST00000584708 322 ntBASIC7.17□□□□□ -1.26
MSX1P28360 OR4F8P-201ENST00000589943 937 ntBASIC7.17□□□□□ -1.26
MSX1P28360 LINC01515-209ENST00000599409 755 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 PRR13P3-201ENST00000603578 376 ntBASIC7.17□□□□□ -1.26
MSX1P28360 AC116312.1-201ENST00000606841 314 ntBASIC7.17□□□□□ -1.26
MSX1P28360 Z95327.3-201ENST00000610385 572 ntBASIC7.17□□□□□ -1.26
MSX1P28360 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
MSX1P28360 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 COX10-AS1-201ENST00000423323 3000 ntTSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 ZNF182-201ENST00000376943 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 AC125603.4-201ENST00000621942 2699 ntBASIC7.17□□□□□ -1.26
MSX1P28360 PIGN-221ENST00000638183 4046 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 CTH-202ENST00000370938 1805 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 AC138915.3-201ENST00000562908 1389 ntBASIC7.17□□□□□ -1.26
MSX1P28360 OR4Q2-201ENST00000541415 2778 ntAPPRIS P5 BASIC7.17□□□□□ -1.26
MSX1P28360 NUP214-208ENST00000483497 3275 ntTSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 NPFFR2-204ENST00000395999 1866 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 RAB3IP-215ENST00000551641 2840 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 USP32P2-201ENST00000412260 4329 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 ANKS1B-220ENST00000550693 3372 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 UBE2V1-204ENST00000371677 2459 ntTSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 MAPK10-319ENST00000641459 2542 ntBASIC7.17□□□□□ -1.26
MSX1P28360 AC135178.2-201ENST00000582471 3087 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
MSX1P28360 GABRE-201ENST00000370328 3152 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 LINC00294-201ENST00000631190 3306 ntBASIC7.16□□□□□ -1.26
MSX1P28360 AC100810.3-201ENST00000633189 2240 ntBASIC7.16□□□□□ -1.26
MSX1P28360 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 WBP2NL-201ENST00000328823 2255 ntAPPRIS P2 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 AL445235.1-201ENST00000431202 1747 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 XRCC6P5-201ENST00000435236 1795 ntBASIC7.16□□□□□ -1.26
MSX1P28360 CHIC1-201ENST00000373502 4158 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 KLHL32-202ENST00000369261 3698 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 RNU6-845P-201ENST00000362578 103 ntBASIC7.16□□□□□ -1.26
MSX1P28360 Y_RNA.86-201ENST00000363020 111 ntBASIC7.16□□□□□ -1.26
MSX1P28360 RN7SKP257-201ENST00000364525 309 ntBASIC7.16□□□□□ -1.26
MSX1P28360 SNORA51.2-201ENST00000364595 132 ntBASIC7.16□□□□□ -1.26
MSX1P28360 AL672167.2-201ENST00000377164 879 ntBASIC7.16□□□□□ -1.26
MSX1P28360 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 RNU6-767P-201ENST00000384132 107 ntBASIC7.16□□□□□ -1.26
MSX1P28360 RNU6-738P-201ENST00000384531 106 ntBASIC7.16□□□□□ -1.26
MSX1P28360 H2AFZP3-201ENST00000394213 387 ntBASIC7.16□□□□□ -1.26
MSX1P28360 AL161909.1-201ENST00000397390 712 ntBASIC7.16□□□□□ -1.26
MSX1P28360 RPS3AP36-201ENST00000398190 775 ntBASIC7.16□□□□□ -1.26
MSX1P28360 EI24P3-201ENST00000399046 1062 ntBASIC7.16□□□□□ -1.26
MSX1P28360 AC025750.1-201ENST00000399891 379 ntBASIC7.16□□□□□ -1.26
MSX1P28360 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC7.16□□□□□ -1.26
MSX1P28360 AL358934.1-201ENST00000432346 324 ntBASIC7.16□□□□□ -1.26
MSX1P28360 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC7.16□□□□□ -1.26
MSX1P28360 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 TAAR7P-201ENST00000436141 242 ntBASIC7.16□□□□□ -1.26
MSX1P28360 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 RABEPKP1-201ENST00000440529 1026 ntBASIC7.16□□□□□ -1.26
MSX1P28360 YWHAQP9-201ENST00000445891 512 ntBASIC7.16□□□□□ -1.26
MSX1P28360 OR51P1P-201ENST00000447547 942 ntBASIC7.16□□□□□ -1.26
MSX1P28360 RPL7P14-201ENST00000449851 741 ntBASIC7.16□□□□□ -1.26
MSX1P28360 AC108463.1-201ENST00000450258 347 ntBASIC7.16□□□□□ -1.26
MSX1P28360 TNR-IT1-201ENST00000455447 630 ntTSL 3 BASIC7.16□□□□□ -1.26
MSX1P28360 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 RPL38P1-201ENST00000460914 211 ntBASIC7.16□□□□□ -1.26
MSX1P28360 RN7SL338P-201ENST00000481467 293 ntBASIC7.16□□□□□ -1.26
MSX1P28360 AP005202.1-201ENST00000489915 867 ntBASIC7.16□□□□□ -1.26
MSX1P28360 AF131216.2-201ENST00000512316 564 ntBASIC7.16□□□□□ -1.26
MSX1P28360 EIF3KP1-201ENST00000513279 656 ntBASIC7.16□□□□□ -1.26
MSX1P28360 RN7SKP2-201ENST00000517003 319 ntBASIC7.16□□□□□ -1.26
MSX1P28360 IGLVIV-59-201ENST00000520218 250 ntBASIC7.16□□□□□ -1.26
MSX1P28360 HSPA8P13-201ENST00000523715 472 ntBASIC7.16□□□□□ -1.26
MSX1P28360 AC135388.1-201ENST00000536512 353 ntTSL 5 BASIC7.16□□□□□ -1.26
MSX1P28360 THAP2-202ENST00000547843 672 ntTSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 AC034268.2-201ENST00000571784 482 ntBASIC7.16□□□□□ -1.26
MSX1P28360 TTN-AS1-210ENST00000578746 677 ntTSL 3 BASIC7.16□□□□□ -1.26
MSX1P28360 RN7SL657P-201ENST00000582431 293 ntBASIC7.16□□□□□ -1.26
MSX1P28360 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC7.16□□□□□ -1.26
MSX1P28360 LINC00663-206ENST00000589910 732 ntTSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 AP001120.4-201ENST00000590231 108 ntBASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms