Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 DEFA9P-201ENST00000433042 285 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC138761.5-201ENST00000433967 325 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 OR7E116P-201ENST00000448529 957 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC005077.1-201ENST00000449226 375 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 MORF4L2P1-201ENST00000503761 858 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC060775.1-201ENST00000518241 520 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC027026.1-201ENST00000532323 742 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC009852.2-201ENST00000567898 485 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 LINC00556-201ENST00000569603 412 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 AL163952.1-202ENST00000569625 600 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC108865.2-201ENST00000606881 432 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AC068870.1-201ENST00000563737 2455 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 MAPK10-338ENST00000641647 3362 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-DMBP28068 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-DMBP28068 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-DMBP28068 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-DMBP28068 RNA5SP435-201ENST00000364044 108 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 RNA5SP187-201ENST00000384400 119 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 RN7SKP29-201ENST00000410957 272 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 RN7SKP279-201ENST00000411383 298 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AL357752.1-201ENST00000412817 349 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 GNG5P5-201ENST00000420444 220 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 RPS27AP6-201ENST00000427962 448 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 MTND2P40-201ENST00000436718 841 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AL359839.1-201ENST00000451975 1160 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 CST12P-201ENST00000457644 362 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC092865.4-201ENST00000477936 615 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 OR7E157P-201ENST00000494376 911 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 GAPDHP62-201ENST00000515313 990 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 FTH1P11-201ENST00000517577 551 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC139365.2-201ENST00000517972 253 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 CASP5-209ENST00000531367 879 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 ASB8-202ENST00000535055 657 ntTSL 2 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 NANOGNBP2-201ENST00000544753 553 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC084824.2-201ENST00000548906 345 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC091078.2-201ENST00000557145 559 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 MIR4776-2-201ENST00000580204 80 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC090236.2-201ENST00000587933 1101 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC015712.7-201ENST00000615211 635 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-DMBP28068 EEF1A1P33-201ENST00000554413 1362 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms