Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC008269.2-201ENST00000561915 1105 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC6.82□□□□□ -1.32
COL8A1P27658 DNM1P31-201ENST00000564149 696 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AC087565.1-201ENST00000565061 391 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC090287.1-201ENST00000578374 291 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 XIAPP1-201ENST00000603162 600 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 RMST_7.1-201ENST00000621935 268 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 TEX46-203ENST00000622840 479 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC183089.2-201ENST00000637931 916 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 INHBA-AS1-201ENST00000415848 3005 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 AC016251.1-201ENST00000624299 4198 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 RGS7-202ENST00000366563 2206 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 GCNT2-216ENST00000495262 2214 ntAPPRIS ALT1 TSL 2 BASIC6.82□□□□□ -1.32
COL8A1P27658 SMAD5-AS1-201ENST00000297163 1816 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 RFX3-202ENST00000358730 2971 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 FMN2-206ENST00000543681 2902 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 ZNF840P-201ENST00000504759 1996 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AL158206.1-201ENST00000563205 1965 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AL137145.2-201ENST00000399868 3086 ntTSL 2 BASIC6.82□□□□□ -1.32
COL8A1P27658 HYDIN2-203ENST00000614586 13885 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 CKAP2-203ENST00000378037 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
COL8A1P27658 MRPL22-201ENST00000265229 3035 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 TNPO3-202ENST00000471166 3019 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 FRG2B-202ENST00000443774 2094 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 SEL1L3-201ENST00000264868 4369 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 SLC15A1-202ENST00000376503 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 MYRFL-203ENST00000547771 3465 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
COL8A1P27658 AKT3-202ENST00000336199 1688 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 OR7A17-203ENST00000642123 3565 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL8A1P27658 ELMO2-202ENST00000352077 2157 ntAPPRIS ALT1 TSL 5 BASIC6.81□□□□□ -1.32
COL8A1P27658 NUDT13-201ENST00000349051 1835 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 AL356361.1-201ENST00000400943 1459 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 MTND5P33-201ENST00000571250 1450 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 PCBD2-204ENST00000512783 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 RNU6-1331P-201ENST00000363658 106 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 MIR568-201ENST00000385036 95 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AL049693.1-201ENST00000402760 611 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 MTCYBP36-201ENST00000404146 440 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 VN1R8P-201ENST00000407739 893 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 ERMN-204ENST00000409925 556 ntTSL 4 BASIC6.81□□□□□ -1.32
COL8A1P27658 AL356968.2-201ENST00000412769 1257 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 PPIAP30-201ENST00000415473 519 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 AC092647.1-201ENST00000420654 287 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AL389915.1-201ENST00000422463 466 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 RIMKLBP2-201ENST00000424737 654 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 MTCO1P3-201ENST00000429327 192 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.81□□□□□ -1.32
COL8A1P27658 AC064862.5-201ENST00000440618 334 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC6.81□□□□□ -1.32
COL8A1P27658 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC6.81□□□□□ -1.32
COL8A1P27658 OR7E62P-201ENST00000456741 477 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 OR13C1P-201ENST00000457612 963 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 Y_RNA.632-201ENST00000459189 102 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.81□□□□□ -1.32
COL8A1P27658 RN7SL283P-201ENST00000489055 303 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.81□□□□□ -1.32
COL8A1P27658 IGHVII-51-2-201ENST00000519778 259 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 RBMS2P1-201ENST00000525031 1226 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AP002748.2-201ENST00000528671 348 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 HTATIP2-207ENST00000532081 774 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC6.81□□□□□ -1.32
COL8A1P27658 AC068631.3-201ENST00000538831 225 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC6.81□□□□□ -1.32
COL8A1P27658 MRPL40P1-201ENST00000542687 604 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 HIF1AP1-201ENST00000553642 175 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC6.81□□□□□ -1.32
COL8A1P27658 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.81□□□□□ -1.32
COL8A1P27658 PSMB7P1-201ENST00000556349 514 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 UBE2CP4-201ENST00000561405 535 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 MIR4310-201ENST00000582950 57 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AC007136.1-201ENST00000589141 199 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.81□□□□□ -1.32
COL8A1P27658 AL137000.1-201ENST00000610528 1244 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AC069209.1-201ENST00000619282 651 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC6.81□□□□□ -1.32
COL8A1P27658 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC6.81□□□□□ -1.32
COL8A1P27658 AC007603.3-201ENST00000636915 979 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 STAT4-201ENST00000358470 2769 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 AC007923.2-201ENST00000584218 1591 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 KLHL8-208ENST00000512111 3245 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
COL8A1P27658 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC6.81□□□□□ -1.32
COL8A1P27658 CDADC1-201ENST00000251108 3386 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 EPB41L1-201ENST00000202028 3514 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms