Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC4.73□□□□□ -1.65
SDCBPO00560 IGLV3-30-201ENST00000524362 298 ntBASIC4.73□□□□□ -1.65
SDCBPO00560 AC079064.1-201ENST00000528365 362 ntBASIC4.73□□□□□ -1.65
SDCBPO00560 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC4.73□□□□□ -1.65
SDCBPO00560 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC4.73□□□□□ -1.65
SDCBPO00560 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC4.73□□□□□ -1.65
SDCBPO00560 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC4.73□□□□□ -1.65
SDCBPO00560 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC4.73□□□□□ -1.65
SDCBPO00560 AC096996.1-201ENST00000563813 325 ntBASIC4.73□□□□□ -1.65
SDCBPO00560 COX6CP7-201ENST00000597056 208 ntBASIC4.73□□□□□ -1.65
SDCBPO00560 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC4.73□□□□□ -1.65
SDCBPO00560 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC4.73□□□□□ -1.65
SDCBPO00560 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC4.73□□□□□ -1.65
SDCBPO00560 AC090607.5-201ENST00000615692 224 ntBASIC4.73□□□□□ -1.65
SDCBPO00560 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SDCBPO00560 AC025262.3-201ENST00000623666 360 ntBASIC4.73□□□□□ -1.65
SDCBPO00560 AC073593.1-201ENST00000624500 411 ntBASIC4.73□□□□□ -1.65
SDCBPO00560 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC4.73□□□□□ -1.65
SDCBPO00560 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.73□□□□□ -1.65
SDCBPO00560 AL034549.2-201ENST00000618285 3373 ntBASIC4.73□□□□□ -1.65
SDCBPO00560 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SDCBPO00560 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SDCBPO00560 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.73□□□□□ -1.65
SDCBPO00560 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SDCBPO00560 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.73□□□□□ -1.65
SDCBPO00560 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SDCBPO00560 EEF1A1P21-201ENST00000512363 1344 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 OR9K1P-202ENST00000641111 3217 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SDCBPO00560 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 AP001284.1-201ENST00000528393 2118 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.72□□□□□ -1.65
SDCBPO00560 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.72□□□□□ -1.65
SDCBPO00560 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SDCBPO00560 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 METTL5-202ENST00000308099 629 ntTSL 3 BASIC4.72□□□□□ -1.65
SDCBPO00560 TMSB4XP2-201ENST00000335179 210 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 RNA5SP477-201ENST00000362639 119 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 SUGT1P2-201ENST00000379452 992 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 HIST1H3PS1-201ENST00000404612 417 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.72□□□□□ -1.65
SDCBPO00560 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.72□□□□□ -1.65
SDCBPO00560 AC073465.2-201ENST00000440938 498 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 GAS5-218ENST00000448718 565 ntTSL 2 BASIC4.72□□□□□ -1.65
SDCBPO00560 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC4.72□□□□□ -1.65
SDCBPO00560 RN7SKP253-201ENST00000516424 309 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 RNA5SP438-201ENST00000516561 112 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 SEPT10P1-201ENST00000517342 1162 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC4.72□□□□□ -1.65
SDCBPO00560 HMGN2P36-201ENST00000529541 409 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC4.72□□□□□ -1.65
SDCBPO00560 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.72□□□□□ -1.65
SDCBPO00560 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC4.72□□□□□ -1.65
SDCBPO00560 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
SDCBPO00560 AC090286.3-201ENST00000573133 187 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.65
SDCBPO00560 AC010503.3-201ENST00000594355 540 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC4.72□□□□□ -1.65
SDCBPO00560 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC4.72□□□□□ -1.65
SDCBPO00560 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.72□□□□□ -1.65
SDCBPO00560 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.72□□□□□ -1.65
SDCBPO00560 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC4.72□□□□□ -1.65
SDCBPO00560 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
SDCBPO00560 IFIT1P1-201ENST00000400497 1449 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 SLC9B1P1-201ENST00000331172 1337 ntBASIC4.72□□□□□ -1.65
SDCBPO00560 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDCBPO00560 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SDCBPO00560 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.71□□□□□ -1.65
SDCBPO00560 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC4.71□□□□□ -1.66
SDCBPO00560 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SDCBPO00560 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.71□□□□□ -1.66
SDCBPO00560 PWAR1-201ENST00000624188 2414 ntBASIC4.71□□□□□ -1.66
SDCBPO00560 AC006206.1-201ENST00000544842 3387 ntBASIC4.71□□□□□ -1.66
SDCBPO00560 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC4.71□□□□□ -1.66
SDCBPO00560 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SDCBPO00560 RNA5SP273-201ENST00000362484 113 ntBASIC4.71□□□□□ -1.66
SDCBPO00560 RNA5SP433-201ENST00000364491 114 ntBASIC4.71□□□□□ -1.66
SDCBPO00560 RN7SKP187-201ENST00000365536 330 ntBASIC4.71□□□□□ -1.66
SDCBPO00560 RN7SKP81-201ENST00000365603 331 ntBASIC4.71□□□□□ -1.66
SDCBPO00560 RNF10P1-201ENST00000418589 369 ntBASIC4.71□□□□□ -1.66
SDCBPO00560 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.71□□□□□ -1.66
SDCBPO00560 AL136231.1-201ENST00000429407 730 ntBASIC4.71□□□□□ -1.66
SDCBPO00560 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC4.71□□□□□ -1.66
SDCBPO00560 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC4.71□□□□□ -1.66
SDCBPO00560 AC110602.1-201ENST00000437414 318 ntBASIC4.71□□□□□ -1.66
SDCBPO00560 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC4.71□□□□□ -1.66
SDCBPO00560 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms