Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 PTPRD-AS1-201ENST00000430766 1959 ntTSL 2 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 MIR188-201ENST00000385034 86 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 U3.28-201ENST00000391249 210 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 YWHAZP4-201ENST00000392459 708 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AL132875.1-201ENST00000403623 949 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AL033519.1-201ENST00000407266 307 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AL139805.1-201ENST00000407837 289 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 RPS4XP5-201ENST00000419038 768 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC019205.1-201ENST00000421830 730 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 OR6R1P-201ENST00000431838 940 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AL445928.1-201ENST00000435545 222 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 SNRPFP2-201ENST00000440710 251 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC015983.1-201ENST00000441577 373 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 TCEA1P3-201ENST00000443005 880 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC113398.2-201ENST00000507630 558 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 GAPDHP71-201ENST00000511530 1003 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AP000859.1-201ENST00000525536 307 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 MIR378H-201ENST00000579966 83 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 MIR4732-201ENST00000581873 76 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AL139124.1-201ENST00000609123 421 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AL139099.4-201ENST00000614802 114 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AL035661.1-201ENST00000620459 1144 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 AC021766.1-201ENST00000624404 741 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 USP40-202ENST00000409945 1946 ntTSL 2 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 OR4F13P-202ENST00000560066 2054 ntBASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.79□□□□□ -1.64
KCNIP3Q9Y2W7 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 GNL2P1-201ENST00000451274 2190 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 MTND5P23-201ENST00000430812 1655 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AL117344.1-201ENST00000407196 616 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 RN7SKP39-201ENST00000410773 322 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 CDY17P-201ENST00000414121 1282 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 VN1R31P-201ENST00000417498 730 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC009784.1-201ENST00000426484 460 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AL138479.1-201ENST00000426913 484 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 CDY8P-201ENST00000428380 1279 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 TMEM183AP1-205ENST00000432739 290 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 CDY20P-201ENST00000447528 1279 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC002553.3-201ENST00000453002 341 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AP000942.1-201ENST00000463969 747 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 OR7E22P-201ENST00000478335 1035 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC099521.1-201ENST00000482557 334 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 RPS7P6-201ENST00000485777 579 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 TDGP1-201ENST00000543961 1229 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC137627.1-201ENST00000545761 289 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC008126.1-201ENST00000549019 480 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 GARSP1-201ENST00000570895 719 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC068408.1-201ENST00000577406 1144 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 AC036176.3-201ENST00000602456 418 ntBASIC4.78□□□□□ -1.64
KCNIP3Q9Y2W7 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms