Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC42Q96M95 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC42Q96M95 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC42Q96M95 RNA5SP30-201ENST00000365552 115 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 RNA5SP187-201ENST00000384400 119 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
CCDC42Q96M95 AL009179.1-201ENST00000406085 265 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 NENFP1-201ENST00000419476 466 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 BX119904.3-201ENST00000428194 957 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6□□□□□ -1.45
CCDC42Q96M95 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6□□□□□ -1.45
CCDC42Q96M95 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC6□□□□□ -1.45
CCDC42Q96M95 TAAR4P-201ENST00000454843 1039 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6□□□□□ -1.45
CCDC42Q96M95 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC6□□□□□ -1.45
CCDC42Q96M95 RPS17P15-201ENST00000475609 349 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 RBBP4P1-201ENST00000502424 1276 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC42Q96M95 AC018797.1-201ENST00000510791 255 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 ASNSP4-201ENST00000511103 447 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 AC091912.1-201ENST00000511351 248 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 RNA5SP340-201ENST00000517132 107 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6□□□□□ -1.45
CCDC42Q96M95 TRIM51DP-201ENST00000529746 596 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6□□□□□ -1.45
CCDC42Q96M95 BTG1P1-201ENST00000540396 508 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 CCDC58P1-201ENST00000578567 430 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 AC008507.3-201ENST00000585753 472 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6□□□□□ -1.45
CCDC42Q96M95 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
CCDC42Q96M95 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6□□□□□ -1.45
CCDC42Q96M95 AC009237.13-201ENST00000603193 276 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6□□□□□ -1.45
CCDC42Q96M95 uc_338.7-201ENST00000621834 124 ntBASIC6□□□□□ -1.45
CCDC42Q96M95 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6□□□□□ -1.45
CCDC42Q96M95 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6□□□□□ -1.45
CCDC42Q96M95 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC42Q96M95 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6□□□□□ -1.45
CCDC42Q96M95 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC42Q96M95 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC6□□□□□ -1.45
CCDC42Q96M95 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
CCDC42Q96M95 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC42Q96M95 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC42Q96M95 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC097063.1-201ENST00000426714 1797 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 MT-RNR2-201ENST00000387347 1559 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC104966.1-201ENST00000467010 1464 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AK4P4-201ENST00000419465 646 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 RPSAP37-201ENST00000470913 821 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC044810.1-201ENST00000480271 711 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC021106.1-201ENST00000509020 1058 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 HSPE1P2-201ENST00000554777 306 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 SETP3-201ENST00000581726 813 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC063977.5-201ENST00000601044 974 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC005479.3-201ENST00000602790 431 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 MAPK10-338ENST00000641647 3362 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 MAPK10-328ENST00000641553 4009 ntBASIC5.99□□□□□ -1.45
CCDC42Q96M95 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC42Q96M95 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC42Q96M95 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC068870.3-201ENST00000625077 2536 ntBASIC5.98□□□□□ -1.45
CCDC42Q96M95 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 COX6B1P3-201ENST00000312310 260 ntBASIC5.98□□□□□ -1.45
CCDC42Q96M95 SNORD56.6-201ENST00000384569 71 ntBASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms