Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.45□□□□□ -1.38
USP39Q53GS9 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.45□□□□□ -1.38
USP39Q53GS9 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
USP39Q53GS9 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
USP39Q53GS9 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.44□□□□□ -1.38
USP39Q53GS9 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
USP39Q53GS9 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
USP39Q53GS9 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
USP39Q53GS9 SNORA51.9-201ENST00000384295 124 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 AL031985.1-201ENST00000392713 418 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 AL358178.1-201ENST00000407698 397 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 RN7SKP144-201ENST00000411108 279 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC6.44□□□□□ -1.38
USP39Q53GS9 AC016769.2-201ENST00000414815 475 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC6.44□□□□□ -1.38
USP39Q53GS9 AC092570.3-201ENST00000420113 693 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 AC003989.1-201ENST00000434569 565 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 ATP5LP2-201ENST00000440646 311 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 AL136455.1-201ENST00000441083 1240 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 MTCYBP21-201ENST00000443300 1113 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC6.44□□□□□ -1.38
USP39Q53GS9 ZNF886P-201ENST00000450781 723 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
USP39Q53GS9 AC002075.1-201ENST00000457396 676 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC6.44□□□□□ -1.38
USP39Q53GS9 RAP1BP2-201ENST00000478270 544 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 RN7SL423P-201ENST00000486202 304 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC6.44□□□□□ -1.38
USP39Q53GS9 AC121161.1-201ENST00000510606 652 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 RNU6-1334P-201ENST00000516032 105 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC6.44□□□□□ -1.38
USP39Q53GS9 AP003355.1-201ENST00000518956 587 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC6.44□□□□□ -1.38
USP39Q53GS9 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC6.44□□□□□ -1.38
USP39Q53GS9 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.44□□□□□ -1.38
USP39Q53GS9 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6.44□□□□□ -1.38
USP39Q53GS9 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
USP39Q53GS9 AC007346.1-201ENST00000569208 867 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
USP39Q53GS9 MTND3P13-201ENST00000574391 343 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
USP39Q53GS9 AC002487.1-201ENST00000604565 994 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 AC073046.2-201ENST00000604756 527 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 AL683813.2-201ENST00000605245 502 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 AL133507.1-201ENST00000605269 557 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 AC117490.2-201ENST00000610042 594 ntBASIC6.44□□□□□ -1.38
USP39Q53GS9 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
USP39Q53GS9 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
USP39Q53GS9 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
USP39Q53GS9 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC6.44□□□□□ -1.38
USP39Q53GS9 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.44□□□□□ -1.38
USP39Q53GS9 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.44□□□□□ -1.38
USP39Q53GS9 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.44□□□□□ -1.38
USP39Q53GS9 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
USP39Q53GS9 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
USP39Q53GS9 SNORD16-201ENST00000362803 99 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 SNORD116-1-201ENST00000384335 95 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 SNORA17A-201ENST00000391185 133 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 NACAP7-201ENST00000407371 609 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 TRIM60P5Y-201ENST00000413946 574 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.43□□□□□ -1.38
USP39Q53GS9 Z68868.1-201ENST00000429048 544 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 AC112492.2-201ENST00000432774 1030 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 AL451136.1-201ENST00000435399 325 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 Z84478.1-201ENST00000438230 1219 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 MED6P1-201ENST00000439659 713 ntBASIC6.43□□□□□ -1.38
USP39Q53GS9 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC6.43□□□□□ -1.38
USP39Q53GS9 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC6.43□□□□□ -1.38
USP39Q53GS9 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms