Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 RPSAP65-201ENST00000429660 595 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AL392003.1-201ENST00000434394 243 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC092967.1-201ENST00000449016 481 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 VPS25P1-201ENST00000455691 508 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC022415.1-202ENST00000486612 523 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 RPL19P11-201ENST00000495944 589 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 NPM1P52-201ENST00000518264 846 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 CYCSP38-201ENST00000559840 322 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC090616.1-201ENST00000583895 447 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 IGKV2OR2-10-201ENST00000613976 311 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AL031658.2-201ENST00000616850 651 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RN7SKP162-201ENST00000363605 345 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 U3.25-201ENST00000391209 220 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RN7SKP151-201ENST00000410230 316 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC113412.1-201ENST00000425840 504 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AL354707.3-201ENST00000427308 331 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RPS27P18-201ENST00000431701 247 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 MED28P4-201ENST00000433137 572 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 ZFAND6P1-201ENST00000434138 605 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 NFU1-207ENST00000462320 558 ntTSL 4 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RN7SL515P-201ENST00000463999 297 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC107015.1-201ENST00000466902 747 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RN7SL273P-201ENST00000481561 299 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RBBP4P1-201ENST00000502424 1276 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 LSM3P4-201ENST00000502948 309 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 PSMA2P2-201ENST00000504319 686 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC006499.4-201ENST00000510947 694 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 CYP4F27P-201ENST00000514557 494 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 SNORD46.2-201ENST00000516021 102 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC012414.2-201ENST00000559474 187 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 TMF1P1-201ENST00000576058 373 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 MIR4420-201ENST00000583944 77 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RAB28P4-201ENST00000622233 665 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 AC116667.2-201ENST00000641075 823 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 EIF3EP1-201ENST00000433978 1316 ntBASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.12□□□□□ -1.59
PDLIM3Q53GG5 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms