Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC7.22□□□□□ -1.25
SOX4Q06945 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC7.22□□□□□ -1.25
SOX4Q06945 MTCO1P28-201ENST00000574177 1528 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 TATDN2P3-201ENST00000452855 3665 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
SOX4Q06945 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.22□□□□□ -1.25
SOX4Q06945 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC7.22□□□□□ -1.25
SOX4Q06945 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC7.22□□□□□ -1.25
SOX4Q06945 U3.52-201ENST00000384034 216 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 RNU6-761P-201ENST00000384148 107 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 DEFB108C-201ENST00000400154 252 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 MTCYBP38-201ENST00000417160 1123 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 PNRC2P1-201ENST00000423940 420 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 C1DP1-201ENST00000426049 402 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 RPS4XP16-201ENST00000427198 791 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 AC239367.3-201ENST00000428996 814 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 MORF4L1P5-201ENST00000433352 961 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 USP9YP35-201ENST00000435696 412 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 LINC00328-2P-201ENST00000436585 219 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 TPMTP4-201ENST00000450749 678 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC7.22□□□□□ -1.25
SOX4Q06945 AC022336.1-201ENST00000475510 337 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 RN7SL382P-201ENST00000482631 282 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 RPS6P4-201ENST00000494693 758 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 SUMO1P1-201ENST00000497904 306 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC7.22□□□□□ -1.25
SOX4Q06945 CBX3P3-201ENST00000508108 532 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 ST13P12-201ENST00000508958 1094 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 AC010285.3-201ENST00000511668 676 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 AL139174.1-201ENST00000531489 886 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC7.22□□□□□ -1.25
SOX4Q06945 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC7.22□□□□□ -1.25
SOX4Q06945 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 ADI1P3-201ENST00000549509 470 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 HNRNPCP1-201ENST00000556181 766 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC7.22□□□□□ -1.25
SOX4Q06945 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC7.22□□□□□ -1.25
SOX4Q06945 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC7.22□□□□□ -1.25
SOX4Q06945 SLC25A36P1-201ENST00000590111 465 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC7.22□□□□□ -1.25
SOX4Q06945 VN1R83P-201ENST00000595685 445 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC7.22□□□□□ -1.25
SOX4Q06945 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 AC100793.4-201ENST00000613683 429 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 AC009509.4-201ENST00000619202 509 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 AC015660.5-201ENST00000623238 564 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 AC069542.2-201ENST00000624816 216 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 AL034408.1-201ENST00000637712 664 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC7.22□□□□□ -1.25
SOX4Q06945 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
SOX4Q06945 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
SOX4Q06945 AL078595.2-201ENST00000605309 1780 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 AC079949.2-201ENST00000617117 2933 ntBASIC7.22□□□□□ -1.25
SOX4Q06945 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC7.22□□□□□ -1.25
SOX4Q06945 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC7.22□□□□□ -1.25
SOX4Q06945 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.22□□□□□ -1.25
SOX4Q06945 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC7.22□□□□□ -1.25
SOX4Q06945 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
SOX4Q06945 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC7.22□□□□□ -1.25
SOX4Q06945 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
SOX4Q06945 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
SOX4Q06945 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC7.21□□□□□ -1.25
SOX4Q06945 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC7.21□□□□□ -1.25
SOX4Q06945 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
SOX4Q06945 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
SOX4Q06945 ENO1P4-201ENST00000416471 1785 ntBASIC7.21□□□□□ -1.25
SOX4Q06945 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.25
SOX4Q06945 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC7.21□□□□□ -1.25
SOX4Q06945 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
SOX4Q06945 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
SOX4Q06945 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC7.21□□□□□ -1.25
SOX4Q06945 HLF-210ENST00000575345 3589 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC7.21□□□□□ -1.26
SOX4Q06945 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC7.21□□□□□ -1.26
SOX4Q06945 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SOX4Q06945 RNU6-1331P-201ENST00000363658 106 ntBASIC7.21□□□□□ -1.26
SOX4Q06945 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
SOX4Q06945 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC7.21□□□□□ -1.26
SOX4Q06945 CDK8P2-201ENST00000415020 547 ntBASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms