Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CACNA1E-205ENST00000367570 9724 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 AC090220.1-201ENST00000593078 1699 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 AC017079.1-201ENST00000333650 415 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 SNORD113.2-201ENST00000364166 89 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 MRPS21P2-201ENST00000424704 264 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 OR2B7P-201ENST00000429302 934 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 GTF2F2P1-201ENST00000511083 675 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC3.82□□□□□ -1.8
PRKDCP78527 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.82□□□□□ -1.8
PRKDCP78527 AC027807.1-201ENST00000559921 996 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 RN7SL356P-201ENST00000582228 248 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 ATP8A2-204ENST00000381655 9575 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 NCOA4P3-201ENST00000513203 1877 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 ARID1A-204ENST00000430799 6521 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC3.82□□□□□ -1.8
PRKDCP78527 USP9YP3-201ENST00000434481 1766 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 OR9K1P-202ENST00000641111 3217 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 DDX10-203ENST00000526794 6707 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 ZNF772-201ENST00000343280 5419 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 AC090424.1-201ENST00000535243 736 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 SDAD1P1-202ENST00000524156 2051 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 MYH11-203ENST00000452625 6886 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 AC009831.5-201ENST00000624000 3189 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 snoU13.24-201ENST00000458998 104 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC3.81□□□□□ -1.8
PRKDCP78527 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC3.81□□□□□ -1.8
PRKDCP78527 MIR3158-1-201ENST00000583596 81 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 AC018816.2-201ENST00000621460 353 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 PIGN-251ENST00000640876 6045 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 RP1-201ENST00000220676 7100 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 SNHG14-210ENST00000546682 8842 ntTSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 DNAH1-201ENST00000420323 13104 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
PRKDCP78527 MIR129-1-201ENST00000384972 72 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC3.81□□□□□ -1.8
PRKDCP78527 IGBP1P3-201ENST00000447449 1000 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.81□□□□□ -1.8
PRKDCP78527 Z95152.1-201ENST00000453556 656 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 AP000797.2-201ENST00000475768 606 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.81□□□□□ -1.8
PRKDCP78527 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC3.81□□□□□ -1.8
PRKDCP78527 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.81□□□□□ -1.8
PRKDCP78527 MIR3124-201ENST00000582636 67 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 AC009237.13-201ENST00000603193 276 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 AC024220.1-201ENST00000603675 484 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC3.81□□□□□ -1.8
PRKDCP78527 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 AGAP1-212ENST00000614409 9932 ntTSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
PRKDCP78527 HRNR-201ENST00000368801 9623 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 AC005618.1-201ENST00000606901 3148 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
PRKDCP78527 RSU1P3-201ENST00000412878 835 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC3.81□□□□□ -1.8
PRKDCP78527 PHBP16-201ENST00000446318 950 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 MIR6075-201ENST00000620782 95 ntBASIC3.81□□□□□ -1.8
PRKDCP78527 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC3.81□□□□□ -1.8
PRKDCP78527 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC3.81□□□□□ -1.8
PRKDCP78527 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms