Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC6.58□□□□□ -1.36
RNF4P78317 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 SLC14A2-203ENST00000586448 3540 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
RNF4P78317 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 AC007406.5-201ENST00000570140 3170 ntBASIC6.57□□□□□ -1.36
RNF4P78317 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
RNF4P78317 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
RNF4P78317 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
RNF4P78317 RNU6-1017P-201ENST00000363613 106 ntBASIC6.57□□□□□ -1.36
RNF4P78317 OR1L1-202ENST00000373686 1083 ntBASIC6.57□□□□□ -1.36
RNF4P78317 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 AC006511.2-201ENST00000388966 660 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AL079341.1-201ENST00000404701 1207 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AL133264.1-201ENST00000407157 562 ntBASIC6.57□□□□□ -1.36
RNF4P78317 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC6.57□□□□□ -1.36
RNF4P78317 NRBF2P2-201ENST00000413087 861 ntBASIC6.57□□□□□ -1.36
RNF4P78317 VTA1P1-201ENST00000414044 866 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC6.57□□□□□ -1.36
RNF4P78317 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 AK4P4-201ENST00000419465 646 ntBASIC6.57□□□□□ -1.36
RNF4P78317 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 MRPS10P2-201ENST00000431226 381 ntBASIC6.57□□□□□ -1.36
RNF4P78317 MYO5BP3-201ENST00000431872 1279 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AL590103.1-201ENST00000434488 307 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 Z74696.2-201ENST00000436514 498 ntBASIC6.57□□□□□ -1.36
RNF4P78317 MRPS21P3-201ENST00000436696 262 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC092641.1-201ENST00000440229 772 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC015983.1-201ENST00000441577 373 ntBASIC6.57□□□□□ -1.36
RNF4P78317 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC6.57□□□□□ -1.36
RNF4P78317 KATNBL1P6-201ENST00000453433 915 ntBASIC6.57□□□□□ -1.36
RNF4P78317 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 GAPDHP53-201ENST00000458397 924 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC021006.1-201ENST00000489849 553 ntBASIC6.57□□□□□ -1.36
RNF4P78317 RN7SL518P-201ENST00000491887 280 ntBASIC6.57□□□□□ -1.36
RNF4P78317 RPL10P7-201ENST00000495649 625 ntBASIC6.57□□□□□ -1.36
RNF4P78317 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 MTATP6P22-201ENST00000507369 598 ntBASIC6.57□□□□□ -1.36
RNF4P78317 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 IGHVIII-25-1-201ENST00000522143 241 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC6.57□□□□□ -1.36
RNF4P78317 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 AP002963.1-201ENST00000530590 184 ntBASIC6.57□□□□□ -1.36
RNF4P78317 CBX3P7-201ENST00000532876 502 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 AC007954.1-201ENST00000554198 494 ntBASIC6.57□□□□□ -1.36
RNF4P78317 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC6.57□□□□□ -1.36
RNF4P78317 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC091932.1-201ENST00000569381 427 ntBASIC6.57□□□□□ -1.36
RNF4P78317 RN7SL131P-201ENST00000579043 256 ntBASIC6.57□□□□□ -1.36
RNF4P78317 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 MIR3159-201ENST00000584572 74 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC6.57□□□□□ -1.36
RNF4P78317 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC6.57□□□□□ -1.36
RNF4P78317 AC018714.1-201ENST00000605028 208 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AL078624.2-201ENST00000605063 554 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC6.57□□□□□ -1.36
RNF4P78317 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC6.57□□□□□ -1.36
RNF4P78317 AC131235.4-201ENST00000609288 620 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC009509.4-201ENST00000619202 509 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AL161420.1-201ENST00000619393 264 ntBASIC6.57□□□□□ -1.36
RNF4P78317 AC024023.1-201ENST00000624530 922 ntBASIC6.57□□□□□ -1.36
RNF4P78317 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC6.57□□□□□ -1.36
RNF4P78317 AC116618.1-201ENST00000634617 774 ntBASIC6.57□□□□□ -1.36
RNF4P78317 MIR665-201ENST00000635949 72 ntBASIC6.57□□□□□ -1.36
RNF4P78317 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.57□□□□□ -1.36
RNF4P78317 SORBS2-221ENST00000437304 3381 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC6.57□□□□□ -1.36
RNF4P78317 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 AP005139.1-201ENST00000580702 1647 ntBASIC6.57□□□□□ -1.36
RNF4P78317 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.57□□□□□ -1.36
RNF4P78317 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.57□□□□□ -1.36
RNF4P78317 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 OR4C1P-202ENST00000641065 1569 ntBASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms