Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC027216.1-201ENST00000577726 685 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.35□□□□□ -1.55
FOXA1P55317 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.35□□□□□ -1.55
FOXA1P55317 AP000769.2-201ENST00000602344 396 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 FO681491.1-202ENST00000623392 737 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
FOXA1P55317 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
FOXA1P55317 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.35□□□□□ -1.55
FOXA1P55317 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
FOXA1P55317 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
FOXA1P55317 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
FOXA1P55317 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
FOXA1P55317 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.34□□□□□ -1.55
FOXA1P55317 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
FOXA1P55317 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.55
FOXA1P55317 BX284613.1-201ENST00000452221 1641 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
FOXA1P55317 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.34□□□□□ -1.55
FOXA1P55317 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
FOXA1P55317 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
FOXA1P55317 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.55
FOXA1P55317 RN7SKP69-201ENST00000365390 305 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 RNA5SP131-201ENST00000365452 119 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 SNORD56.6-201ENST00000384569 71 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 RMRPP5-201ENST00000411156 267 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AC245060.4-201ENST00000413293 1121 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.34□□□□□ -1.55
FOXA1P55317 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.34□□□□□ -1.55
FOXA1P55317 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.34□□□□□ -1.55
FOXA1P55317 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.34□□□□□ -1.55
FOXA1P55317 AP000547.1-201ENST00000454360 617 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AC087672.1-201ENST00000479876 766 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AC006499.4-201ENST00000510947 694 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AC021193.1-201ENST00000511607 420 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.34□□□□□ -1.55
FOXA1P55317 SNORA70.20-201ENST00000516848 126 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AC060775.1-201ENST00000518241 520 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.34□□□□□ -1.55
FOXA1P55317 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.34□□□□□ -1.55
FOXA1P55317 OR11H3P-201ENST00000554547 982 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
FOXA1P55317 H3F3BP2-201ENST00000583907 357 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 MIR7853-201ENST00000584820 132 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AL049840.6-201ENST00000604583 345 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AP005431.1-201ENST00000618479 319 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AC135068.5-201ENST00000624197 983 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 AL390318.1-201ENST00000624564 687 ntBASIC5.34□□□□□ -1.55
FOXA1P55317 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC5.34□□□□□ -1.55
FOXA1P55317 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
FOXA1P55317 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.56
FOXA1P55317 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.34□□□□□ -1.56
FOXA1P55317 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
FOXA1P55317 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
FOXA1P55317 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
FOXA1P55317 AC093671.1-201ENST00000624981 2929 ntBASIC5.34□□□□□ -1.56
FOXA1P55317 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
FOXA1P55317 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
FOXA1P55317 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 MAPK10-328ENST00000641553 4009 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.33□□□□□ -1.56
FOXA1P55317 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.33□□□□□ -1.56
FOXA1P55317 AC083837.1-201ENST00000565297 2994 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 RNA5SP394-201ENST00000364216 119 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 HMGB1P20-201ENST00000402555 677 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 RNU2-18P-201ENST00000411224 162 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC5.33□□□□□ -1.56
FOXA1P55317 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.33□□□□□ -1.56
FOXA1P55317 ACA64.1-201ENST00000459171 127 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 PSAT1P4-201ENST00000466500 526 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 IGBP1P4-201ENST00000503202 879 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 SCARNA20.4-201ENST00000516969 131 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 AC092709.1-201ENST00000521355 1045 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 TRIM77BP-201ENST00000524985 1119 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.33□□□□□ -1.56
FOXA1P55317 OR8G3P-201ENST00000533406 921 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.33□□□□□ -1.56
FOXA1P55317 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.33□□□□□ -1.56
FOXA1P55317 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.33□□□□□ -1.56
FOXA1P55317 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 AP005403.1-201ENST00000579720 229 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.33□□□□□ -1.56
FOXA1P55317 AC009779.8-202ENST00000607990 932 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 MIR6780B-201ENST00000610307 79 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 AC087565.3-203ENST00000641018 837 ntBASIC5.33□□□□□ -1.56
FOXA1P55317 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.33□□□□□ -1.56
FOXA1P55317 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
FOXA1P55317 AL353796.1-201ENST00000561542 3241 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms