Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 AC104454.1-201ENST00000421341 1401 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AC027279.4-201ENST00000624371 2072 ntBASIC6.1□□□□□ -1.43
MSX2P35548 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX2P35548 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 RNA5SP350-201ENST00000363298 111 ntBASIC6.1□□□□□ -1.43
MSX2P35548 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 RNU6-636P-201ENST00000384598 107 ntBASIC6.1□□□□□ -1.43
MSX2P35548 RNU6-796P-201ENST00000391086 107 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 AL121978.1-201ENST00000402778 359 ntBASIC6.1□□□□□ -1.43
MSX2P35548 SFR1P1-201ENST00000403720 688 ntBASIC6.1□□□□□ -1.43
MSX2P35548 Y_RNA.619-201ENST00000410951 90 ntBASIC6.1□□□□□ -1.43
MSX2P35548 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX2P35548 AL356968.2-201ENST00000412769 1257 ntBASIC6.1□□□□□ -1.43
MSX2P35548 HMGA1P8-201ENST00000414130 321 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AL445183.3-201ENST00000414168 502 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AL158825.1-201ENST00000414735 521 ntBASIC6.1□□□□□ -1.43
MSX2P35548 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 GRPEL2P2-201ENST00000421856 670 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX2P35548 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX2P35548 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 HNRNPA1P57-201ENST00000431359 530 ntTSL 4 BASIC6.1□□□□□ -1.43
MSX2P35548 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 MTCO1P43-201ENST00000431831 488 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 AL606490.7-201ENST00000433136 191 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX2P35548 AC046176.1-201ENST00000435260 1170 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AL138878.2-201ENST00000440581 1241 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AC245517.2-201ENST00000442890 346 ntBASIC6.1□□□□□ -1.43
MSX2P35548 MTND1P1-201ENST00000445453 368 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 CTSLP6-201ENST00000458273 1002 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 LINC01006-207ENST00000458645 738 ntTSL 4 BASIC6.1□□□□□ -1.43
MSX2P35548 RN7SL390P-201ENST00000470634 284 ntBASIC6.1□□□□□ -1.43
MSX2P35548 RPS12P31-201ENST00000491419 398 ntBASIC6.1□□□□□ -1.43
MSX2P35548 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 HMGB1P3-201ENST00000502802 616 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AC034244.1-201ENST00000507687 207 ntBASIC6.1□□□□□ -1.43
MSX2P35548 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 GAPDHP71-201ENST00000511530 1003 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 CASC11-203ENST00000519071 791 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 AC103855.4-201ENST00000533158 265 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX2P35548 CYB5AP5-201ENST00000549779 389 ntBASIC6.1□□□□□ -1.43
MSX2P35548 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
MSX2P35548 AL162632.2-201ENST00000553933 399 ntBASIC6.1□□□□□ -1.43
MSX2P35548 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX2P35548 FRG2MP-201ENST00000613317 856 ntBASIC6.1□□□□□ -1.43
MSX2P35548 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX2P35548 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX2P35548 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX2P35548 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX2P35548 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
MSX2P35548 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 AL359976.1-201ENST00000418655 3528 ntBASIC6.09□□□□□ -1.43
MSX2P35548 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 AC005261.2-201ENST00000593427 4258 ntBASIC6.09□□□□□ -1.43
MSX2P35548 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX2P35548 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
MSX2P35548 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
MSX2P35548 SNORA38B-201ENST00000363524 131 ntBASIC6.09□□□□□ -1.43
MSX2P35548 RNA5SP478-201ENST00000364657 115 ntBASIC6.09□□□□□ -1.43
MSX2P35548 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
MSX2P35548 GNG5P2-201ENST00000372054 207 ntBASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms