Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC7.36□□□□□ -1.23
HOXC9P31274 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC7.36□□□□□ -1.23
HOXC9P31274 SNORA67-201ENST00000384423 137 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 RN7SKP279-201ENST00000411383 298 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 PPP2R2DP1-201ENST00000420526 637 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 FAM96AP1-201ENST00000430879 482 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 NANOGP9-201ENST00000439890 892 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 SUMO2P1-206ENST00000445436 284 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 AL389915.2-201ENST00000454576 441 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 RPL7P6-201ENST00000480903 738 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC7.36□□□□□ -1.23
HOXC9P31274 EIF4A2P5-201ENST00000529914 499 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC7.36□□□□□ -1.23
HOXC9P31274 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC7.36□□□□□ -1.23
HOXC9P31274 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC7.36□□□□□ -1.23
HOXC9P31274 RPL10P14-201ENST00000565265 298 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC7.36□□□□□ -1.23
HOXC9P31274 SETP3-201ENST00000581726 813 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 TAS2R6P-201ENST00000605022 826 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 AC133644.2-201ENST00000608142 540 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
HOXC9P31274 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC7.36□□□□□ -1.23
HOXC9P31274 UBA3-213ENST00000631029 123 ntTSL 5 BASIC7.36□□□□□ -1.23
HOXC9P31274 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC7.36□□□□□ -1.23
HOXC9P31274 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC7.36□□□□□ -1.23
HOXC9P31274 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
HOXC9P31274 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
HOXC9P31274 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC7.35□□□□□ -1.23
HOXC9P31274 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC7.35□□□□□ -1.23
HOXC9P31274 MIR585-201ENST00000384887 94 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 OR4K12P-201ENST00000406538 961 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 DUTP5-201ENST00000406790 469 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.35□□□□□ -1.23
HOXC9P31274 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC7.35□□□□□ -1.23
HOXC9P31274 RPS18P6-201ENST00000476880 458 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC7.35□□□□□ -1.23
HOXC9P31274 RNU6ATAC24P-201ENST00000516811 135 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 HMGB1P40-201ENST00000525121 540 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
HOXC9P31274 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
HOXC9P31274 AC137627.1-201ENST00000545761 289 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC7.35□□□□□ -1.23
HOXC9P31274 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC7.35□□□□□ -1.23
HOXC9P31274 AP001542.1-201ENST00000591314 200 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC7.35□□□□□ -1.23
HOXC9P31274 AC069307.1-201ENST00000602820 447 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 AC116651.1-201ENST00000609724 556 ntBASIC7.35□□□□□ -1.23
HOXC9P31274 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC7.35□□□□□ -1.23
HOXC9P31274 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC7.35□□□□□ -1.23
HOXC9P31274 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
HOXC9P31274 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
HOXC9P31274 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
HOXC9P31274 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
HOXC9P31274 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 BRD7P6-201ENST00000431406 1860 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC7.34□□□□□ -1.23
HOXC9P31274 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
HOXC9P31274 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC7.34□□□□□ -1.23
HOXC9P31274 AC068870.1-201ENST00000563737 2455 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
HOXC9P31274 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
HOXC9P31274 AC103591.2-201ENST00000265259 766 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 RNU1-43P-201ENST00000365052 165 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
HOXC9P31274 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
HOXC9P31274 AL109941.1-201ENST00000401925 229 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC7.34□□□□□ -1.23
HOXC9P31274 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC7.34□□□□□ -1.23
HOXC9P31274 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC7.34□□□□□ -1.23
HOXC9P31274 AC015864.1-201ENST00000496512 544 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 SNRPCP2-201ENST00000504370 475 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC7.34□□□□□ -1.23
HOXC9P31274 PMS2P3-207ENST00000529061 717 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
HOXC9P31274 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC7.34□□□□□ -1.23
HOXC9P31274 AC127381.1-201ENST00000555979 939 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC7.34□□□□□ -1.23
HOXC9P31274 AL136295.6-201ENST00000610486 658 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 AC090527.3-201ENST00000619041 548 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC7.34□□□□□ -1.23
HOXC9P31274 ZNF101P1-201ENST00000435701 1720 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 ABCA11P-202ENST00000504019 2110 ntBASIC7.34□□□□□ -1.23
HOXC9P31274 AC123912.3-201ENST00000600907 1367 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 OR55B1P-203ENST00000641518 2602 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 AC023421.1-201ENST00000590535 1785 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
HOXC9P31274 AC011933.2-201ENST00000578539 2790 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 KCNMB3P1-202ENST00000493696 3389 ntBASIC7.33□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 151.2 ms