Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 RNA5SP123-201ENST00000363244 119 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 RNU1-136P-201ENST00000384181 164 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 MIR105-1-201ENST00000385222 81 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 AC006466.1-201ENST00000438721 289 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 AL672167.3-201ENST00000465951 960 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 RPL7P16-201ENST00000479738 738 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.83□□□□□ -1.32
COL5A3P25940 AC021006.3-201ENST00000530771 192 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC6.83□□□□□ -1.32
COL5A3P25940 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 AC087283.1-201ENST00000604029 1074 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 AC008745.1-201ENST00000604064 271 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC6.83□□□□□ -1.32
COL5A3P25940 AC015660.5-201ENST00000623238 564 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC6.83□□□□□ -1.32
COL5A3P25940 MAPK10-350ENST00000641777 965 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
COL5A3P25940 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.83□□□□□ -1.32
COL5A3P25940 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
COL5A3P25940 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.82□□□□□ -1.32
COL5A3P25940 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
COL5A3P25940 AL590139.1-201ENST00000416267 400 ntBASIC6.82□□□□□ -1.32
COL5A3P25940 RNGTTP1-201ENST00000420965 728 ntBASIC6.82□□□□□ -1.32
COL5A3P25940 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.82□□□□□ -1.32
COL5A3P25940 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC6.82□□□□□ -1.32
COL5A3P25940 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.82□□□□□ -1.32
COL5A3P25940 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.82□□□□□ -1.32
COL5A3P25940 AC209154.1-201ENST00000582156 337 ntBASIC6.82□□□□□ -1.32
COL5A3P25940 MIR4697-201ENST00000582977 78 ntBASIC6.82□□□□□ -1.32
COL5A3P25940 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC6.82□□□□□ -1.32
COL5A3P25940 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
COL5A3P25940 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.82□□□□□ -1.32
COL5A3P25940 OR4F13P-202ENST00000560066 2054 ntBASIC6.82□□□□□ -1.32
COL5A3P25940 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC6.82□□□□□ -1.32
COL5A3P25940 AC016745.2-201ENST00000608834 3443 ntBASIC6.82□□□□□ -1.32
COL5A3P25940 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
COL5A3P25940 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.82□□□□□ -1.32
COL5A3P25940 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
COL5A3P25940 CASC19-221ENST00000641309 1382 ntBASIC6.82□□□□□ -1.32
COL5A3P25940 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
COL5A3P25940 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL5A3P25940 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.82□□□□□ -1.32
COL5A3P25940 RNA5SP505-201ENST00000364748 108 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 AL353625.1-202ENST00000366273 571 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 SNORA51.8-201ENST00000384234 132 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 AC016397.1-201ENST00000412463 242 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 OR10T1P-201ENST00000424327 947 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.81□□□□□ -1.32
COL5A3P25940 FTH1P2-201ENST00000466086 412 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 AC092754.1-201ENST00000472975 479 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC6.81□□□□□ -1.32
COL5A3P25940 AL671862.1-201ENST00000515851 349 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 BNIP3P1-201ENST00000547295 580 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.81□□□□□ -1.32
COL5A3P25940 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL5A3P25940 AC079075.1-201ENST00000559543 878 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL5A3P25940 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL5A3P25940 AC073575.2-201ENST00000614212 627 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC6.81□□□□□ -1.32
COL5A3P25940 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.81□□□□□ -1.32
COL5A3P25940 AC026951.1-201ENST00000559530 2459 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 AC007114.2-201ENST00000576014 4281 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.81□□□□□ -1.32
COL5A3P25940 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.81□□□□□ -1.32
COL5A3P25940 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL5A3P25940 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC6.81□□□□□ -1.32
COL5A3P25940 AC096921.1-201ENST00000411661 375 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC6.81□□□□□ -1.32
COL5A3P25940 AC008072.1-201ENST00000434254 824 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 IGBP1P3-201ENST00000447449 1000 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 GYG1P1-201ENST00000460864 698 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms