Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 BNIP3P19-201ENST00000605397 577 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 AC018754.1-201ENST00000607486 925 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.21□□□□□ -1.58
LMX1BO60663 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
LMX1BO60663 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.21□□□□□ -1.58
LMX1BO60663 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.21□□□□□ -1.58
LMX1BO60663 AC068446.1-201ENST00000556425 1549 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.21□□□□□ -1.58
LMX1BO60663 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 CIR1P2-201ENST00000514821 1342 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 AC091305.2-201ENST00000624049 1576 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
LMX1BO60663 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.2□□□□□ -1.58
LMX1BO60663 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.2□□□□□ -1.58
LMX1BO60663 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LMX1BO60663 RNA5SP156-201ENST00000410250 110 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 AC245096.1-201ENST00000413104 546 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.2□□□□□ -1.58
LMX1BO60663 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC5.2□□□□□ -1.58
LMX1BO60663 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.2□□□□□ -1.58
LMX1BO60663 TRGV7-201ENST00000427089 353 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 MTND6P12-201ENST00000428247 522 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 LYPLA1P1-201ENST00000434514 622 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.2□□□□□ -1.58
LMX1BO60663 AL161636.2-201ENST00000445179 927 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.2□□□□□ -1.58
LMX1BO60663 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.2□□□□□ -1.58
LMX1BO60663 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.2□□□□□ -1.58
LMX1BO60663 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC5.2□□□□□ -1.58
LMX1BO60663 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.2□□□□□ -1.58
LMX1BO60663 AP003102.1-201ENST00000525638 661 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 AP003080.1-202ENST00000526526 915 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC5.2□□□□□ -1.58
LMX1BO60663 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.2□□□□□ -1.58
LMX1BO60663 RPA2P1-201ENST00000556557 721 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 AP001357.1-201ENST00000586304 1053 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.2□□□□□ -1.58
LMX1BO60663 AP001823.1-201ENST00000604056 1003 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 AC135803.1-201ENST00000608748 565 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.2□□□□□ -1.58
LMX1BO60663 AC000095.2-202ENST00000637415 154 ntBASIC5.2□□□□□ -1.58
LMX1BO60663 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.2□□□□□ -1.58
LMX1BO60663 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
LMX1BO60663 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.2□□□□□ -1.58
LMX1BO60663 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
LMX1BO60663 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LMX1BO60663 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.19□□□□□ -1.58
LMX1BO60663 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
LMX1BO60663 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
LMX1BO60663 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.19□□□□□ -1.58
LMX1BO60663 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.19□□□□□ -1.58
LMX1BO60663 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
LMX1BO60663 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LMX1BO60663 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
LMX1BO60663 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LMX1BO60663 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LMX1BO60663 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
LMX1BO60663 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
LMX1BO60663 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
LMX1BO60663 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LMX1BO60663 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.19□□□□□ -1.58
LMX1BO60663 RNU6-883P-201ENST00000384597 107 ntBASIC5.19□□□□□ -1.58
LMX1BO60663 AC087752.1-201ENST00000391360 558 ntBASIC5.19□□□□□ -1.58
LMX1BO60663 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.19□□□□□ -1.58
LMX1BO60663 AL355143.1-201ENST00000407101 841 ntBASIC5.19□□□□□ -1.58
LMX1BO60663 UBE2V1P15-201ENST00000407776 448 ntBASIC5.19□□□□□ -1.58
LMX1BO60663 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.19□□□□□ -1.58
LMX1BO60663 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms