Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RAB9AP2-201ENST00000443911 597 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 RBMY2TP-201ENST00000451162 947 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC009963.3-201ENST00000458090 486 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC005165.2-201ENST00000466070 380 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC098847.1-201ENST00000473094 348 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 OR8Q1P-201ENST00000526467 655 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AP003396.4-201ENST00000527574 265 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AP001804.2-201ENST00000533932 910 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 HIRAP1-201ENST00000605318 787 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 MIR6889-201ENST00000613185 59 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AL354950.1-201ENST00000614150 568 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 MIR6721-201ENST00000617181 87 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AL136228.1-201ENST00000622221 319 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 CASC19-274ENST00000642018 970 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS39Q96JC1 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS39Q96JC1 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 LINC02019-201ENST00000608605 2060 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 RNU6-1331P-201ENST00000363658 106 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 SNORA51.9-201ENST00000384295 124 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 RNU6-729P-201ENST00000384399 107 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 SEPT7P8-201ENST00000413308 775 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 DEFA9P-201ENST00000433042 285 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC005077.1-201ENST00000449226 375 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 GEMIN2P1-201ENST00000454246 752 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 YRDCP3-201ENST00000456507 480 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 OR7E157P-201ENST00000494376 911 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 RPA2P1-201ENST00000556557 721 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 MIR3154-201ENST00000577829 84 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC005244.1-201ENST00000582566 339 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC245014.3-201ENST00000618589 347 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 AL354854.1-201ENST00000455940 1363 ntBASIC5.79□□□□□ -1.48
VPS39Q96JC1 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS39Q96JC1 AC233968.1-201ENST00000611212 1300 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 RNA5SP232-201ENST00000364144 119 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 MIR130B-202ENST00000385018 82 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 GCNT1P4-201ENST00000404096 329 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 SETP10-201ENST00000424368 814 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC113412.1-201ENST00000425840 504 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC099670.2-201ENST00000435130 321 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 EEF1B2P3-201ENST00000447718 678 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC093166.3-201ENST00000448785 303 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms