Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SKA3Q8IX90 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 Z95327.3-201ENST00000610385 572 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 OR11H2-202ENST00000641517 1085 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SKA3Q8IX90 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SKA3Q8IX90 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SKA3Q8IX90 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SKA3Q8IX90 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SKA3Q8IX90 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SKA3Q8IX90 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 MTCO1P7-201ENST00000419523 1542 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 SUGT1P2-201ENST00000379452 992 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 AL358178.1-201ENST00000407698 397 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 RN7SKP240-201ENST00000410583 375 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 AL136231.1-201ENST00000429407 730 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 USP24P1-201ENST00000433802 779 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 AL359839.1-201ENST00000451975 1160 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 RN7SL57P-201ENST00000493687 290 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 RN7SKP70-201ENST00000516655 271 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 AC078899.1-201ENST00000521432 1185 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 TRIM77BP-201ENST00000524985 1119 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 AC090424.1-201ENST00000535243 736 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 AL356801.1-201ENST00000559320 294 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 MIR4660-201ENST00000583549 74 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 AC079315.1-201ENST00000602952 623 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 AC129778.1-202ENST00000623812 261 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 AL591379.1-207ENST00000635982 261 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SKA3Q8IX90 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
SKA3Q8IX90 OR9K1P-202ENST00000641111 3217 ntBASIC5.14□□□□□ -1.59
SKA3Q8IX90 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC093849.1-201ENST00000563631 2209 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 RNU6-167P-201ENST00000384292 106 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 EI24P3-201ENST00000399046 1062 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms