Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC109347.2-201ENST00000610220 349 ntBASIC6.59□□□□□ -1.35
RNF4P78317 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.59□□□□□ -1.35
RNF4P78317 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 AC024595.1-201ENST00000623088 387 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC087894.3-201ENST00000623682 349 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AL357562.1-201ENST00000624911 609 ntBASIC6.59□□□□□ -1.35
RNF4P78317 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC6.59□□□□□ -1.36
RNF4P78317 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.36
RNF4P78317 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
RNF4P78317 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
RNF4P78317 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC6.59□□□□□ -1.36
RNF4P78317 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC6.59□□□□□ -1.36
RNF4P78317 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC6.58□□□□□ -1.36
RNF4P78317 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 AC093844.1-201ENST00000514910 1361 ntBASIC6.58□□□□□ -1.36
RNF4P78317 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.58□□□□□ -1.36
RNF4P78317 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC6.58□□□□□ -1.36
RNF4P78317 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC6.58□□□□□ -1.36
RNF4P78317 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
RNF4P78317 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC6.58□□□□□ -1.36
RNF4P78317 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 RNU6-707P-201ENST00000364647 95 ntBASIC6.58□□□□□ -1.36
RNF4P78317 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
RNF4P78317 RNU6-1320P-201ENST00000390838 107 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RNU6-244P-201ENST00000391028 104 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RNU6-1269P-201ENST00000391139 107 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RNA5SP53-201ENST00000391299 120 ntBASIC6.58□□□□□ -1.36
RNF4P78317 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 AL034403.1-201ENST00000399414 885 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AL139100.1-201ENST00000408001 498 ntBASIC6.58□□□□□ -1.36
RNF4P78317 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.58□□□□□ -1.36
RNF4P78317 AL121916.1-201ENST00000429405 308 ntBASIC6.58□□□□□ -1.36
RNF4P78317 GAS5-211ENST00000432536 959 ntTSL 2 BASIC6.58□□□□□ -1.36
RNF4P78317 OR2B8P-201ENST00000432841 938 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC6.58□□□□□ -1.36
RNF4P78317 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.58□□□□□ -1.36
RNF4P78317 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
RNF4P78317 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC6.58□□□□□ -1.36
RNF4P78317 PRDX1P1-201ENST00000449329 596 ntBASIC6.58□□□□□ -1.36
RNF4P78317 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC6.58□□□□□ -1.36
RNF4P78317 AL354872.1-201ENST00000456361 967 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RPS27AP2-201ENST00000457576 465 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RNU6-599P-201ENST00000459383 107 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RNU6-1193P-201ENST00000459461 107 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RN7SL160P-201ENST00000468558 284 ntBASIC6.58□□□□□ -1.36
RNF4P78317 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
RNF4P78317 AP005202.1-201ENST00000489915 867 ntBASIC6.58□□□□□ -1.36
RNF4P78317 PFN2-217ENST00000498307 556 ntTSL 4 BASIC6.58□□□□□ -1.36
RNF4P78317 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC6.58□□□□□ -1.36
RNF4P78317 AC055733.3-201ENST00000505214 523 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC108475.1-201ENST00000507880 950 ntBASIC6.58□□□□□ -1.36
RNF4P78317 OR5H7P-201ENST00000514084 930 ntBASIC6.58□□□□□ -1.36
RNF4P78317 HNRNPKP5-201ENST00000515300 253 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RNA5SP116-201ENST00000516132 98 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RN7SKP233-201ENST00000517005 110 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC6.58□□□□□ -1.36
RNF4P78317 AC023632.1-201ENST00000518463 375 ntBASIC6.58□□□□□ -1.36
RNF4P78317 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC6.58□□□□□ -1.36
RNF4P78317 AC092747.2-201ENST00000545069 983 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC6.58□□□□□ -1.36
RNF4P78317 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.58□□□□□ -1.36
RNF4P78317 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC6.58□□□□□ -1.36
RNF4P78317 AC126323.4-201ENST00000566935 234 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC074051.3-201ENST00000570238 358 ntBASIC6.58□□□□□ -1.36
RNF4P78317 ROCK1P1-201ENST00000573767 549 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.58□□□□□ -1.36
RNF4P78317 AC087683.1-201ENST00000591187 441 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC6.58□□□□□ -1.36
RNF4P78317 WBP1LP12-201ENST00000604449 331 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC099676.1-201ENST00000608886 657 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC069234.5-201ENST00000611056 416 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC010678.1-201ENST00000614118 713 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC005899.7-201ENST00000618199 588 ntBASIC6.58□□□□□ -1.36
RNF4P78317 U6.42-201ENST00000618440 107 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RNU6-368P-201ENST00000620928 107 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RNU6-538P-201ENST00000622329 107 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC012629.3-201ENST00000623397 328 ntBASIC6.58□□□□□ -1.36
RNF4P78317 AC087821.2-201ENST00000637086 450 ntBASIC6.58□□□□□ -1.36
RNF4P78317 RAD17P2-201ENST00000451754 1977 ntBASIC6.58□□□□□ -1.36
RNF4P78317 MED6-212ENST00000615788 1700 ntTSL 5 BASIC6.58□□□□□ -1.36
RNF4P78317 HSP90AA2P-201ENST00000530115 2196 ntBASIC6.58□□□□□ -1.36
RNF4P78317 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms