Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 EIF5AP4-201ENST00000441206 465 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 BMS1P11-201ENST00000442351 885 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA3P55318 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 PRPF38AP1-201ENST00000451976 933 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 BMS1P9-201ENST00000457640 885 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 AC245028.2-201ENST00000458673 253 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 AC092865.4-201ENST00000477936 615 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.19□□□□□ -1.74
FOXA3P55318 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXA3P55318 DUTP1-201ENST00000493631 470 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXA3P55318 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXA3P55318 EIF3KP3-201ENST00000514461 639 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 CR383658.1-201ENST00000514609 734 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 SETP21-201ENST00000514799 892 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA3P55318 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXA3P55318 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXA3P55318 PMS2P3-207ENST00000529061 717 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 AC027369.5-201ENST00000533838 755 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA3P55318 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA3P55318 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXA3P55318 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA3P55318 RPSAP75-201ENST00000605848 301 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 PACRG-210ENST00000611387 279 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXA3P55318 AL021918.2-201ENST00000613415 194 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 AC099654.3-201ENST00000447087 1546 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXA3P55318 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXA3P55318 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 TCP1P3-201ENST00000414406 1498 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA3P55318 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXA3P55318 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 MTCO1P28-201ENST00000574177 1528 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 NPL-202ENST00000367552 745 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 MIR130A-201ENST00000385274 89 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 MRPL32P1-201ENST00000406301 247 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 RNA5SP296-201ENST00000410523 111 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 AC211486.3-201ENST00000412694 621 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXA3P55318 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA3P55318 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA3P55318 NPM1P23-201ENST00000440193 849 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 IGBP1P3-201ENST00000447449 1000 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 AL596266.1-201ENST00000448132 400 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 AL445466.1-201ENST00000448432 357 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 AC099521.1-201ENST00000482557 334 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC4.18□□□□□ -1.74
FOXA3P55318 AC015524.1-201ENST00000491585 472 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 OSTC-204ENST00000512478 663 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 AC092709.1-201ENST00000521355 1045 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 FAU-203ENST00000525297 355 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 PSMC1P8-201ENST00000536820 1296 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 AL390334.1-201ENST00000556395 450 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 NIFKP4-201ENST00000567275 1192 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC4.18□□□□□ -1.74
FOXA3P55318 MIR4472-2-201ENST00000582069 67 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXA3P55318 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXA3P55318 AL390877.1-201ENST00000605704 214 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 AC068213.1-201ENST00000625124 226 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC4.18□□□□□ -1.74
FOXA3P55318 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA3P55318 AC007996.1-201ENST00000620414 2821 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 AC100757.1-201ENST00000616872 1835 ntBASIC4.18□□□□□ -1.74
FOXA3P55318 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA3P55318 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA3P55318 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
FOXA3P55318 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
FOXA3P55318 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA3P55318 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA3P55318 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA3P55318 MTCO1P46-201ENST00000451639 1491 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms