Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 HYDIN2-203ENST00000614586 13885 ntBASIC9.18□□□□□ -0.94
CUX1P39880 DBIP1-201ENST00000401435 260 ntBASIC9.18□□□□□ -0.94
CUX1P39880 RPL12P39-201ENST00000455456 496 ntBASIC9.18□□□□□ -0.94
CUX1P39880 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC9.18□□□□□ -0.94
CUX1P39880 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC9.18□□□□□ -0.94
CUX1P39880 AP005403.1-201ENST00000579720 229 ntBASIC9.18□□□□□ -0.94
CUX1P39880 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.94
CUX1P39880 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
CUX1P39880 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
CUX1P39880 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
CUX1P39880 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
CUX1P39880 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC9.17□□□□□ -0.94
CUX1P39880 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
CUX1P39880 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC9.17□□□□□ -0.94
CUX1P39880 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
CUX1P39880 RNA5SP123-201ENST00000363244 119 ntBASIC9.17□□□□□ -0.94
CUX1P39880 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC9.17□□□□□ -0.94
CUX1P39880 AC092017.2-201ENST00000427600 362 ntBASIC9.17□□□□□ -0.94
CUX1P39880 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC9.17□□□□□ -0.94
CUX1P39880 USP24P1-201ENST00000433802 779 ntBASIC9.17□□□□□ -0.94
CUX1P39880 AC092647.3-201ENST00000443044 633 ntBASIC9.17□□□□□ -0.94
CUX1P39880 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC9.17□□□□□ -0.94
CUX1P39880 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC9.17□□□□□ -0.94
CUX1P39880 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC9.17□□□□□ -0.94
CUX1P39880 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC9.17□□□□□ -0.94
CUX1P39880 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC9.17□□□□□ -0.94
CUX1P39880 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
CUX1P39880 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
CUX1P39880 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC9.17□□□□□ -0.94
CUX1P39880 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC9.17□□□□□ -0.94
CUX1P39880 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC9.17□□□□□ -0.94
CUX1P39880 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
CUX1P39880 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
CUX1P39880 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC9.17□□□□□ -0.94
CUX1P39880 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
CUX1P39880 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC9.16□□□□□ -0.94
CUX1P39880 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
CUX1P39880 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC9.16□□□□□ -0.94
CUX1P39880 ATP6V1G1P7-201ENST00000415853 349 ntBASIC9.16□□□□□ -0.94
CUX1P39880 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC9.16□□□□□ -0.94
CUX1P39880 AC006466.1-201ENST00000438721 289 ntBASIC9.16□□□□□ -0.94
CUX1P39880 AL451063.1-201ENST00000450164 1133 ntBASIC9.16□□□□□ -0.94
CUX1P39880 GYG1P1-201ENST00000460864 698 ntBASIC9.16□□□□□ -0.94
CUX1P39880 ST13P12-201ENST00000508958 1094 ntBASIC9.16□□□□□ -0.94
CUX1P39880 AC134349.2-201ENST00000535136 910 ntBASIC9.16□□□□□ -0.94
CUX1P39880 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC9.16□□□□□ -0.94
CUX1P39880 AC112694.2-201ENST00000623697 768 ntBASIC9.16□□□□□ -0.94
CUX1P39880 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC9.16□□□□□ -0.94
CUX1P39880 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC9.16□□□□□ -0.94
CUX1P39880 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC9.16□□□□□ -0.94
CUX1P39880 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
CUX1P39880 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
CUX1P39880 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
CUX1P39880 AC013268.3-201ENST00000262716 2324 ntBASIC9.16□□□□□ -0.94
CUX1P39880 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC9.16□□□□□ -0.94
CUX1P39880 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
CUX1P39880 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
CUX1P39880 AL121886.1-201ENST00000358609 435 ntBASIC9.15□□□□□ -0.94
CUX1P39880 RN7SKP95-201ENST00000362860 303 ntBASIC9.15□□□□□ -0.94
CUX1P39880 AL035419.1-201ENST00000397037 564 ntBASIC9.15□□□□□ -0.94
CUX1P39880 DNAJA1P4-201ENST00000406473 1166 ntBASIC9.15□□□□□ -0.94
CUX1P39880 AC211486.3-201ENST00000412694 621 ntBASIC9.15□□□□□ -0.94
CUX1P39880 AC104634.1-201ENST00000452720 462 ntBASIC9.15□□□□□ -0.94
CUX1P39880 Z92846.1-201ENST00000456203 268 ntBASIC9.15□□□□□ -0.94
CUX1P39880 AC079080.1-201ENST00000479841 822 ntBASIC9.15□□□□□ -0.94
CUX1P39880 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC9.15□□□□□ -0.94
CUX1P39880 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC9.15□□□□□ -0.94
CUX1P39880 UBE2Q2P10-201ENST00000514854 900 ntBASIC9.15□□□□□ -0.94
CUX1P39880 AL671862.1-201ENST00000515851 349 ntBASIC9.15□□□□□ -0.94
CUX1P39880 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC9.15□□□□□ -0.94
CUX1P39880 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC9.15□□□□□ -0.94
CUX1P39880 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC9.15□□□□□ -0.94
CUX1P39880 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC9.15□□□□□ -0.94
CUX1P39880 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX1P39880 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX1P39880 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX1P39880 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
CUX1P39880 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC9.15□□□□□ -0.94
CUX1P39880 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX1P39880 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
CUX1P39880 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC9.15□□□□□ -0.94
CUX1P39880 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX1P39880 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC9.15□□□□□ -0.94
CUX1P39880 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC9.15□□□□□ -0.94
CUX1P39880 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC9.15□□□□□ -0.94
CUX1P39880 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX1P39880 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX1P39880 WBP11P1-201ENST00000562560 1931 ntBASIC9.15□□□□□ -0.94
CUX1P39880 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
CUX1P39880 AC022819.1-201ENST00000563495 3910 ntBASIC9.15□□□□□ -0.95
CUX1P39880 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC9.15□□□□□ -0.95
CUX1P39880 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.95
CUX1P39880 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC9.15□□□□□ -0.95
CUX1P39880 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC9.15□□□□□ -0.95
CUX1P39880 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC9.15□□□□□ -0.95
CUX1P39880 AC137627.1-201ENST00000545761 289 ntBASIC9.15□□□□□ -0.95
CUX1P39880 MIR3934-201ENST00000579806 107 ntBASIC9.15□□□□□ -0.95
CUX1P39880 MIR4691-201ENST00000583764 85 ntBASIC9.15□□□□□ -0.95
CUX1P39880 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC9.14□□□□□ -0.95
CUX1P39880 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 155.6 ms