Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC120036.2-201ENST00000509729 1474 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC023490.2-201ENST00000359859 470 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 RN7SKP15-201ENST00000364742 309 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 RNA5SP122-201ENST00000384457 108 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 HMGN1P20-201ENST00000411849 300 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 IPPKP1-201ENST00000422501 768 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 BX276092.6-201ENST00000430476 250 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 AL389925.1-201ENST00000432257 728 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC015983.1-201ENST00000441577 373 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 BX276092.8-201ENST00000455722 250 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC093166.4-201ENST00000457867 318 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 RPL12P24-201ENST00000474907 486 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 PDCL3P4-201ENST00000489621 720 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC025458.1-201ENST00000506046 166 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC105384.2-201ENST00000508433 640 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC111000.6-201ENST00000514471 709 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC007956.1-201ENST00000555623 542 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC019322.1-201ENST00000571869 389 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 TEX41-218ENST00000596540 882 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 AC020633.1-201ENST00000468439 2247 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 MRRFP1-201ENST00000435941 1675 ntBASIC4.38□□□□□ -1.71
HLA-DMBP28068 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DMBP28068 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
HLA-DMBP28068 ADAM24P-201ENST00000398655 2101 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 AL132656.3-201ENST00000606384 1595 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 SNORA5.1-201ENST00000384275 131 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 AC066692.1-201ENST00000421721 457 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 AC099670.2-201ENST00000435130 321 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 GAPDHP48-201ENST00000436626 961 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 RPS23P9-201ENST00000448848 438 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 AC016724.1-201ENST00000453215 421 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 DUTP1-201ENST00000493631 470 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 AC006499.4-201ENST00000510947 694 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 AC021146.10-201ENST00000515628 706 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 RNA5SP340-201ENST00000517132 107 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 IGHVIII-76-1-201ENST00000523776 286 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 TRIM77BP-201ENST00000524985 1119 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 TRIM51DP-201ENST00000529746 596 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms