Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
SDC1P18827 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 SNORA64.1-201ENST00000362600 132 ntBASIC5.36□□□□□ -1.55
SDC1P18827 SUGT1P2-201ENST00000379452 992 ntBASIC5.36□□□□□ -1.55
SDC1P18827 CLNS1AP1-201ENST00000435954 682 ntBASIC5.36□□□□□ -1.55
SDC1P18827 AL359265.1-201ENST00000440296 795 ntBASIC5.36□□□□□ -1.55
SDC1P18827 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.36□□□□□ -1.55
SDC1P18827 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.36□□□□□ -1.55
SDC1P18827 YRDCP3-201ENST00000456507 480 ntBASIC5.36□□□□□ -1.55
SDC1P18827 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.36□□□□□ -1.55
SDC1P18827 AC114781.3-201ENST00000512083 142 ntBASIC5.36□□□□□ -1.55
SDC1P18827 Vault.2-201ENST00000516519 98 ntBASIC5.36□□□□□ -1.55
SDC1P18827 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.36□□□□□ -1.55
SDC1P18827 OR5AM1P-201ENST00000532136 1032 ntBASIC5.36□□□□□ -1.55
SDC1P18827 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.36□□□□□ -1.55
SDC1P18827 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.36□□□□□ -1.55
SDC1P18827 AC068305.2-201ENST00000550567 1205 ntBASIC5.36□□□□□ -1.55
SDC1P18827 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.36□□□□□ -1.55
SDC1P18827 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.36□□□□□ -1.55
SDC1P18827 AC115989.2-201ENST00000578640 563 ntBASIC5.36□□□□□ -1.55
SDC1P18827 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.36□□□□□ -1.55
SDC1P18827 AC048341.3-201ENST00000619323 491 ntBASIC5.36□□□□□ -1.55
SDC1P18827 AC073592.6-201ENST00000624271 415 ntBASIC5.36□□□□□ -1.55
SDC1P18827 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.36□□□□□ -1.55
SDC1P18827 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.36□□□□□ -1.55
SDC1P18827 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 TET1P1-201ENST00000426627 2301 ntBASIC5.36□□□□□ -1.55
SDC1P18827 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
SDC1P18827 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.35□□□□□ -1.55
SDC1P18827 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.35□□□□□ -1.55
SDC1P18827 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.35□□□□□ -1.55
SDC1P18827 OR4G1P-202ENST00000641173 1788 ntBASIC5.35□□□□□ -1.55
SDC1P18827 AC090220.1-201ENST00000593078 1699 ntBASIC5.35□□□□□ -1.55
SDC1P18827 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
SDC1P18827 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.35□□□□□ -1.55
SDC1P18827 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
SDC1P18827 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
SDC1P18827 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 AC009784.1-201ENST00000426484 460 ntBASIC5.35□□□□□ -1.55
SDC1P18827 SUMO2P8-201ENST00000434672 286 ntBASIC5.35□□□□□ -1.55
SDC1P18827 NDUFB4P8-201ENST00000435351 367 ntBASIC5.35□□□□□ -1.55
SDC1P18827 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.35□□□□□ -1.55
SDC1P18827 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.35□□□□□ -1.55
SDC1P18827 AL596266.1-201ENST00000448132 400 ntBASIC5.35□□□□□ -1.55
SDC1P18827 AP002884.1-201ENST00000479691 655 ntBASIC5.35□□□□□ -1.55
SDC1P18827 AC022215.1-201ENST00000481770 362 ntBASIC5.35□□□□□ -1.55
SDC1P18827 RPSAP51-201ENST00000497462 645 ntBASIC5.35□□□□□ -1.55
SDC1P18827 NENFP3-201ENST00000503735 313 ntBASIC5.35□□□□□ -1.55
SDC1P18827 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.35□□□□□ -1.55
SDC1P18827 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.35□□□□□ -1.55
SDC1P18827 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.35□□□□□ -1.55
SDC1P18827 SEPT10P1-201ENST00000517342 1162 ntBASIC5.35□□□□□ -1.55
SDC1P18827 AC011853.1-201ENST00000518911 454 ntBASIC5.35□□□□□ -1.55
SDC1P18827 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.35□□□□□ -1.55
SDC1P18827 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.35□□□□□ -1.55
SDC1P18827 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC5.35□□□□□ -1.55
SDC1P18827 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.35□□□□□ -1.55
SDC1P18827 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.35□□□□□ -1.55
SDC1P18827 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.35□□□□□ -1.55
SDC1P18827 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.35□□□□□ -1.55
SDC1P18827 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
SDC1P18827 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.35□□□□□ -1.55
SDC1P18827 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SDC1P18827 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.34□□□□□ -1.55
SDC1P18827 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.34□□□□□ -1.55
SDC1P18827 AC079097.1-201ENST00000512187 1399 ntBASIC5.34□□□□□ -1.55
SDC1P18827 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.34□□□□□ -1.55
SDC1P18827 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.34□□□□□ -1.55
SDC1P18827 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.34□□□□□ -1.55
SDC1P18827 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SDC1P18827 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SDC1P18827 AC004386.1-201ENST00000393214 761 ntBASIC5.34□□□□□ -1.55
SDC1P18827 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.34□□□□□ -1.55
SDC1P18827 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.34□□□□□ -1.55
SDC1P18827 AC069154.1-201ENST00000432914 542 ntBASIC5.34□□□□□ -1.55
SDC1P18827 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.34□□□□□ -1.55
SDC1P18827 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms