Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC090958.1-201ENST00000511122 351 ntBASIC7□□□□□ -1.29
COL6A1P12109 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC7□□□□□ -1.29
COL6A1P12109 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC7□□□□□ -1.29
COL6A1P12109 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC7□□□□□ -1.29
COL6A1P12109 IGKV2-18-201ENST00000522607 343 ntBASIC7□□□□□ -1.29
COL6A1P12109 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
COL6A1P12109 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC7□□□□□ -1.29
COL6A1P12109 AC022404.1-201ENST00000555320 273 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC7□□□□□ -1.29
COL6A1P12109 ZNF322P1-201ENST00000568013 1209 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC090616.1-201ENST00000583895 447 ntBASIC7□□□□□ -1.29
COL6A1P12109 AP002884.5-201ENST00000595053 1132 ntBASIC7□□□□□ -1.29
COL6A1P12109 RPP40P2-201ENST00000603596 712 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC069431.2-201ENST00000604149 1099 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC080013.6-201ENST00000606185 215 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC018445.2-201ENST00000622987 260 ntBASIC7□□□□□ -1.29
COL6A1P12109 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC7□□□□□ -1.29
COL6A1P12109 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC7□□□□□ -1.29
COL6A1P12109 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC7□□□□□ -1.29
COL6A1P12109 DDX6P1-205ENST00000441966 1436 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC106872.5-201ENST00000508856 1416 ntBASIC7□□□□□ -1.29
COL6A1P12109 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
COL6A1P12109 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
COL6A1P12109 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC7□□□□□ -1.29
COL6A1P12109 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC7□□□□□ -1.29
COL6A1P12109 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 RBMY1HP-201ENST00000382759 1389 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.99□□□□□ -1.29
COL6A1P12109 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.99□□□□□ -1.29
COL6A1P12109 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.99□□□□□ -1.29
COL6A1P12109 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 RNA5SP443-201ENST00000363083 132 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 RPL22P22-201ENST00000395439 379 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 ZSCAN12P1-201ENST00000406489 419 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 FIGN-202ENST00000409634 746 ntTSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.99□□□□□ -1.29
COL6A1P12109 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC6.99□□□□□ -1.29
COL6A1P12109 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 ARAFP1-201ENST00000422172 605 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
COL6A1P12109 MTCO1P51-201ENST00000427672 1060 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 AL512605.1-202ENST00000441919 381 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 AL359955.2-201ENST00000445380 353 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 RSL24D1P3-201ENST00000449255 495 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 SNORD11.1-201ENST00000459482 85 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 AC098583.1-201ENST00000480875 255 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.99□□□□□ -1.29
COL6A1P12109 AC022206.1-201ENST00000495947 347 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC6.99□□□□□ -1.29
COL6A1P12109 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 MTCYBP35-201ENST00000503630 1137 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC6.99□□□□□ -1.29
COL6A1P12109 AC111000.6-201ENST00000514471 709 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 SNORA76.2-201ENST00000517095 137 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 C1DP5-201ENST00000525775 383 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
COL6A1P12109 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 GNG2-208ENST00000554875 430 ntTSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC6.99□□□□□ -1.29
COL6A1P12109 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.99□□□□□ -1.29
COL6A1P12109 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 AL589674.2-201ENST00000604304 337 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 AC079395.3-201ENST00000615161 484 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 LINC00216-201ENST00000623548 1126 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms