| MT1A | P04731 | AC004656.1-201 | ENST00000568479 | 4951 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | DLG1-213 | ENST00000443183 | 2516 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | NCOA7-208 | ENST00000438495 | 3133 nt | APPRIS ALT1 TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | ZNF300P1-202 | ENST00000520773 | 3115 nt | TSL 5 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | CASP10-204 | ENST00000346817 | 3926 nt | APPRIS ALT2 TSL 5 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC092376.2-201 | ENST00000622621 | 4116 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | FCHSD2-201 | ENST00000311172 | 4340 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | ST8SIA4-201 | ENST00000231461 | 6303 nt | APPRIS P1 TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | PEX5L-202 | ENST00000392649 | 8540 nt | APPRIS ALT2 TSL 5 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | DMD-228 | ENST00000541735 | 7080 nt | TSL 5 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | INTS6-203 | ENST00000442263 | 15428 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | GCSAML-210 | ENST00000536561 | 4063 nt | APPRIS P3 TSL 4 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | LRRC37A3-204 | ENST00000400877 | 3273 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AL359313.1-201 | ENST00000447311 | 2293 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AP002833.3-201 | ENST00000625075 | 2265 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | ETV1-208 | ENST00000420159 | 6231 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | PHC3-217 | ENST00000497658 | 2087 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | LINC00824-203 | ENST00000520206 | 2055 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | TNRC6B-206 | ENST00000454349 | 18279 nt | APPRIS ALT2 TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | MROH2B-201 | ENST00000399564 | 5239 nt | APPRIS P1 TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | MEMO1-202 | ENST00000379383 | 1498 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | FILIP1L-201 | ENST00000331335 | 4219 nt | APPRIS P1 TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | TMSB4XP4-201 | ENST00000323496 | 618 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | CLEC4A-203 | ENST00000352620 | 615 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | FAS-203 | ENST00000355279 | 983 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | CLEC4A-204 | ENST00000360500 | 597 nt | TSL 5 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | LEMD1-203 | ENST00000367152 | 741 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | PAGE2-202 | ENST00000374968 | 551 nt | APPRIS P1 TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | G6PC2-202 | ENST00000375363 | 1214 nt | APPRIS P1 TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | ZRSR2-202 | ENST00000380308 | 744 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | PRH2-201 | ENST00000381847 | 641 nt | APPRIS P1 TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | SMARCA2-207 | ENST00000382186 | 955 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | SNORA5.1-201 | ENST00000384275 | 131 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | RNA5SP122-201 | ENST00000384457 | 108 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | TRDC-201 | ENST00000390477 | 720 nt | APPRIS P1 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | SNORA17A-201 | ENST00000391185 | 133 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | RNA5SP178-201 | ENST00000410380 | 128 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | RMRPP5-201 | ENST00000411156 | 267 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC096921.1-201 | ENST00000411661 | 375 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AL355300.1-201 | ENST00000412439 | 187 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | EEF1A1P29-201 | ENST00000416082 | 1096 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AL355339.1-202 | ENST00000417542 | 458 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | LINC01203-201 | ENST00000419566 | 580 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AP000221.1-201 | ENST00000419694 | 1046 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | OR10T1P-201 | ENST00000424327 | 947 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC104843.2-201 | ENST00000427666 | 297 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AL389925.1-201 | ENST00000432257 | 728 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | TMEM183AP1-205 | ENST00000432739 | 290 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC138761.5-201 | ENST00000433967 | 325 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AL355339.1-201 | ENST00000434386 | 435 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC242426.1-201 | ENST00000435270 | 960 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC006335.2-201 | ENST00000437993 | 330 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | Z84478.1-201 | ENST00000438230 | 1219 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC002504.1-201 | ENST00000438281 | 691 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC064862.4-201 | ENST00000442180 | 334 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC092941.2-201 | ENST00000444379 | 1008 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC005297.1-201 | ENST00000444765 | 862 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | RNF219-AS1-202 | ENST00000444769 | 590 nt | TSL 4 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AL450996.1-201 | ENST00000445574 | 1202 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | LINC01880-201 | ENST00000446593 | 561 nt | TSL 4 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | CD200R1L-202 | ENST00000448932 | 750 nt | APPRIS ALT2 TSL 5 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | RPL31P15-201 | ENST00000449770 | 338 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | CBX1P2-201 | ENST00000453841 | 458 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | RPS27AP2-201 | ENST00000457576 | 465 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | SNORD125-201 | ENST00000459538 | 96 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | NDUFB2-210 | ENST00000475276 | 539 nt | TSL 4 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | SEPT7P9-201 | ENST00000475691 | 413 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC245041.2-201 | ENST00000479781 | 376 nt | TSL 5 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC087672.1-201 | ENST00000479876 | 766 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | EFCAB10-203 | ENST00000480514 | 740 nt | APPRIS ALT1 TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | PPIAP19-201 | ENST00000486414 | 492 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC093001.1-201 | ENST00000489011 | 551 nt | TSL 4 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC080013.1-206 | ENST00000496842 | 712 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | CSNK1A1P3-201 | ENST00000504105 | 330 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC068672.3-203 | ENST00000505166 | 311 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC027627.1-201 | ENST00000506895 | 753 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC109481.1-201 | ENST00000509173 | 282 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC034238.3-201 | ENST00000512349 | 591 nt | TSL 4 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC021146.10-201 | ENST00000515628 | 706 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | SNORA70.11-201 | ENST00000515987 | 138 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | SNORA70.13-201 | ENST00000516116 | 138 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | SNORA43.3-201 | ENST00000517240 | 103 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | TMEM97P2-201 | ENST00000517841 | 403 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | IGKV3D-34-201 | ENST00000522638 | 302 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | PMS2P3-207 | ENST00000529061 | 717 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | RSF1-IT2-201 | ENST00000529656 | 566 nt | TSL 5 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | CCDC60-203 | ENST00000536742 | 886 nt | APPRIS ALT2 TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC090109.1-201 | ENST00000548885 | 819 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC084824.2-201 | ENST00000548906 | 345 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AL390816.1-201 | ENST00000553990 | 322 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AL049872.1-201 | ENST00000556323 | 322 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC135626.1-201 | ENST00000556983 | 435 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC103968.1-201 | ENST00000557841 | 573 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC026992.1-201 | ENST00000558269 | 571 nt | TSL 2 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC092078.1-201 | ENST00000558370 | 325 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC068722.1-202 | ENST00000559600 | 655 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AGGF1P7-201 | ENST00000562369 | 913 nt | BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC113208.4-201 | ENST00000563568 | 206 nt | TSL 3 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | CASC22-201 | ENST00000569713 | 386 nt | TSL 5 BASIC | 1.72 | □□□□□ -2.13 | | |
| MT1A | P04731 | AC139099.1-201 | ENST00000573737 | 976 nt | TSL 1 (best) BASIC | 1.72 | □□□□□ -2.13 | | |