Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LMX1BO60663 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.22□□□□□ -1.57
LMX1BO60663 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LMX1BO60663 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LMX1BO60663 TMSB4XP4-201ENST00000323496 618 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 OR10R3P-201ENST00000361688 942 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 RNA5SP110-201ENST00000362638 115 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.22□□□□□ -1.57
LMX1BO60663 AC130360.1-201ENST00000425489 1117 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 NDUFA5P1-201ENST00000433858 341 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 AL353662.1-201ENST00000439099 327 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 SDC4P-201ENST00000453285 601 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 AL356390.1-201ENST00000455684 397 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC5.22□□□□□ -1.57
LMX1BO60663 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 RPL23AP40-201ENST00000487630 390 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.22□□□□□ -1.57
LMX1BO60663 PSMA2P2-201ENST00000504319 686 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.22□□□□□ -1.57
LMX1BO60663 AC110760.3-202ENST00000515177 371 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.22□□□□□ -1.57
LMX1BO60663 RNA5SP434-201ENST00000516647 121 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 AC130365.2-201ENST00000525882 1201 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC5.22□□□□□ -1.57
LMX1BO60663 MIR4443-201ENST00000585052 53 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 AL391834.2-201ENST00000609982 546 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 RFPL4AP6-201ENST00000616792 846 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 AC009032.1-201ENST00000617574 431 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 AC245014.3-201ENST00000618589 347 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
LMX1BO60663 AC011933.2-201ENST00000578539 2790 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
LMX1BO60663 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.22□□□□□ -1.57
LMX1BO60663 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.22□□□□□ -1.57
LMX1BO60663 AL136520.1-201ENST00000600311 1322 ntBASIC5.22□□□□□ -1.57
LMX1BO60663 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
LMX1BO60663 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
LMX1BO60663 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.21□□□□□ -1.57
LMX1BO60663 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
LMX1BO60663 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
LMX1BO60663 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
LMX1BO60663 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.21□□□□□ -1.57
LMX1BO60663 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.21□□□□□ -1.57
LMX1BO60663 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 RNU105B-201ENST00000364478 208 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.21□□□□□ -1.58
LMX1BO60663 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
LMX1BO60663 RNA5SP284-201ENST00000384547 118 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 RN7SKP166-201ENST00000410812 305 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 AC079355.1-201ENST00000421770 223 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.21□□□□□ -1.58
LMX1BO60663 AC073410.1-201ENST00000435125 589 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC5.21□□□□□ -1.58
LMX1BO60663 OR3D1P-201ENST00000438288 955 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.21□□□□□ -1.58
LMX1BO60663 AL158068.1-201ENST00000506116 616 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 AC119751.4-201ENST00000507498 357 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 HMGN1P15-201ENST00000513870 295 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 OR5H7P-201ENST00000514084 930 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 RNA5SP340-201ENST00000517132 107 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
LMX1BO60663 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC5.21□□□□□ -1.58
LMX1BO60663 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.21□□□□□ -1.58
LMX1BO60663 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.21□□□□□ -1.58
LMX1BO60663 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LMX1BO60663 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.21□□□□□ -1.58
LMX1BO60663 AC135626.1-201ENST00000556983 435 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 AC023158.1-201ENST00000561632 1025 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.21□□□□□ -1.58
LMX1BO60663 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.21□□□□□ -1.58
LMX1BO60663 AC119403.2-201ENST00000590960 598 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.21□□□□□ -1.58
LMX1BO60663 DNAJC19P3-201ENST00000594491 331 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.21□□□□□ -1.58
LMX1BO60663 AC073333.2-201ENST00000603589 769 ntBASIC5.21□□□□□ -1.58
LMX1BO60663 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms