Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC073575.2-201ENST00000614212 627 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 AL158062.1-201ENST00000619632 745 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 MFSD8-219ENST00000641228 2559 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC114774.1-201ENST00000507410 1770 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 NLRP3P1-201ENST00000622303 1785 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 NPM1P37-201ENST00000403105 874 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 AL096711.1-201ENST00000404780 554 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC016739.1-201ENST00000405359 345 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 RNGTTP1-201ENST00000420965 728 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC106901.1-201ENST00000425086 698 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 TIMM8BP2-201ENST00000445940 251 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC097463.1-201ENST00000447288 481 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 AL158068.1-201ENST00000506116 616 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC105384.2-201ENST00000508433 640 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 GLUD1P3-202ENST00000508551 200 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC084824.2-201ENST00000548906 345 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 AL121839.1-201ENST00000556233 1185 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 AL136131.3-201ENST00000607600 188 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC004801.6-201ENST00000616571 978 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 AC096708.4-201ENST00000620563 552 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 OR11H2-202ENST00000641517 1085 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 PARP4P2-201ENST00000446672 3326 ntBASIC5.81□□□□□ -1.48
VPS39Q96JC1 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS39Q96JC1 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS39Q96JC1 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC117409.1-201ENST00000470499 1310 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 QRSL1P1-201ENST00000400977 1540 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 WDR95P-201ENST00000425638 1542 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC090181.3-201ENST00000624777 1514 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC005005.4-201ENST00000623789 16698 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS39Q96JC1 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS39Q96JC1 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS39Q96JC1 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC087752.1-201ENST00000391360 558 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC002524.1-201ENST00000411687 547 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 RPL12P43-201ENST00000420608 499 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AC019205.1-201ENST00000421830 730 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS39Q96JC1 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS39Q96JC1 RAB9AP5-201ENST00000437794 597 ntBASIC5.8□□□□□ -1.48
VPS39Q96JC1 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms