Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 RPL36AP15-201ENST00000444514 266 ntBASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 AC092647.2-201ENST00000452998 253 ntBASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 HMGB1P44-201ENST00000508597 572 ntBASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 RN7SKP288-201ENST00000516227 268 ntBASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 AC091042.1-201ENST00000579213 173 ntBASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 AL445647.2-201ENST00000615170 130 ntBASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 AC132825.1-201ENST00000463573 2247 ntBASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 ADGRF5-202ENST00000283296 5810 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 NBPF9-202ENST00000584027 5034 ntAPPRIS P2 TSL 5 BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
ALMS1Q8TCU4 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AL080317.3-201ENST00000607434 4315 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AL121768.1-201ENST00000613917 2544 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 RNA5SP123-201ENST00000363244 119 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 ATP6V1G1P7-201ENST00000415853 349 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AL731534.1-201ENST00000434711 269 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 MRPS21P3-201ENST00000436696 262 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 PWAR1-201ENST00000624188 2414 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 RNA5SP479-201ENST00000364858 117 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AC093824.1-201ENST00000508796 343 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AC008033.2-201ENST00000542626 177 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AC009117.1-201ENST00000563948 554 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AC136624.4-201ENST00000573044 370 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AP005403.1-201ENST00000579720 229 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 AC090607.5-201ENST00000615692 224 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 IRF5P1-201ENST00000504852 2164 ntBASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
ALMS1Q8TCU4 MRRF-207ENST00000373729 870 ntTSL 3 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 RPS4XP20-201ENST00000505751 772 ntBASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 RN7SKP21-201ENST00000516503 220 ntBASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 MIR3160-1-201ENST00000577972 85 ntBASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 AC091193.1-201ENST00000604640 448 ntBASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
ALMS1Q8TCU4 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms