Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 TUG1_1.1-201ENST00000610654 145 ntBASIC7.25□□□□□ -1.25
SOX4Q06945 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
SOX4Q06945 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC7.25□□□□□ -1.25
SOX4Q06945 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC7.25□□□□□ -1.25
SOX4Q06945 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SOX4Q06945 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC7.25□□□□□ -1.25
SOX4Q06945 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.25□□□□□ -1.25
SOX4Q06945 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SOX4Q06945 AL359715.4-201ENST00000606629 1436 ntBASIC7.25□□□□□ -1.25
SOX4Q06945 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC7.25□□□□□ -1.25
SOX4Q06945 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC7.25□□□□□ -1.25
SOX4Q06945 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC7.25□□□□□ -1.25
SOX4Q06945 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SOX4Q06945 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
SOX4Q06945 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SOX4Q06945 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.24□□□□□ -1.25
SOX4Q06945 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 ZNF833P-201ENST00000424938 1494 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC217777.1-201ENST00000570034 1471 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 PLA2G7-202ENST00000537365 1747 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
SOX4Q06945 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 FAM3C2-201ENST00000312214 681 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
SOX4Q06945 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 Y_RNA.41-201ENST00000362646 102 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 SNORA64.3-201ENST00000365647 134 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC7.24□□□□□ -1.25
SOX4Q06945 MT-TH-201ENST00000387441 69 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 OOSP1-201ENST00000398992 1270 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 AL133260.1-201ENST00000405720 405 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC7.24□□□□□ -1.25
SOX4Q06945 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 RN7SKP166-201ENST00000410812 305 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC7.24□□□□□ -1.25
SOX4Q06945 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 OR2AF1P-201ENST00000454899 889 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC098818.1-201ENST00000478593 252 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC023050.1-201ENST00000498198 304 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AK4P6-201ENST00000505168 528 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC079140.3-201ENST00000511111 550 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC093664.1-201ENST00000511779 289 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 LECT2-203ENST00000512872 762 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 RNU6-319P-201ENST00000516025 108 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 DEFB130C-202ENST00000530001 230 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC008147.3-201ENST00000548666 354 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AL591767.3-201ENST00000554632 525 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 DUXAP1-201ENST00000556632 463 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 CASC16-202ENST00000563844 610 ntTSL 3 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC7.24□□□□□ -1.25
SOX4Q06945 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC087683.1-201ENST00000591187 441 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 AL356986.1-201ENST00000604085 341 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC100767.2-201ENST00000604840 693 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 AC010857.1-201ENST00000606398 594 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 SNORD96A-201ENST00000606577 79 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 MIR6780B-201ENST00000610307 79 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC004223.4-201ENST00000612426 332 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 FRG1HP-204ENST00000617940 757 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC095031.1-201ENST00000623685 672 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 AC068213.1-201ENST00000625124 226 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
SOX4Q06945 CASC19-264ENST00000641912 1184 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
SOX4Q06945 Z97989.1-201ENST00000531702 2421 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 AL356317.1-201ENST00000396110 1436 ntBASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms