Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RN7SL42P-201ENST00000579786 294 ntBASIC6.6□□□□□ -1.35
RNF4P78317 AC005479.3-201ENST00000602790 431 ntBASIC6.6□□□□□ -1.35
RNF4P78317 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC6.6□□□□□ -1.35
RNF4P78317 AC104184.1-201ENST00000607513 721 ntBASIC6.6□□□□□ -1.35
RNF4P78317 AL357078.3-201ENST00000607528 618 ntBASIC6.6□□□□□ -1.35
RNF4P78317 AC097505.1-201ENST00000610199 565 ntBASIC6.6□□□□□ -1.35
RNF4P78317 AC012676.3-201ENST00000614983 479 ntBASIC6.6□□□□□ -1.35
RNF4P78317 AC009283.1-201ENST00000615852 645 ntBASIC6.6□□□□□ -1.35
RNF4P78317 ASB8-218ENST00000629941 278 ntTSL 5 BASIC6.6□□□□□ -1.35
RNF4P78317 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC6.6□□□□□ -1.35
RNF4P78317 AC026108.1-201ENST00000635444 547 ntBASIC6.6□□□□□ -1.35
RNF4P78317 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC6.6□□□□□ -1.35
RNF4P78317 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
RNF4P78317 MFSD8-245ENST00000641743 948 ntBASIC6.6□□□□□ -1.35
RNF4P78317 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC6.6□□□□□ -1.35
RNF4P78317 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.6□□□□□ -1.35
RNF4P78317 AL137100.1-201ENST00000556703 1620 ntBASIC6.6□□□□□ -1.35
RNF4P78317 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
RNF4P78317 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
RNF4P78317 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
RNF4P78317 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.6□□□□□ -1.35
RNF4P78317 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
RNF4P78317 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC6.6□□□□□ -1.35
RNF4P78317 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 AC012020.1-201ENST00000624541 1728 ntBASIC6.59□□□□□ -1.35
RNF4P78317 EEF1A1P14-201ENST00000421195 1376 ntBASIC6.59□□□□□ -1.35
RNF4P78317 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
RNF4P78317 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.59□□□□□ -1.35
RNF4P78317 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 Y_RNA.6-201ENST00000362350 114 ntBASIC6.59□□□□□ -1.35
RNF4P78317 RN7SKP55-201ENST00000364888 307 ntBASIC6.59□□□□□ -1.35
RNF4P78317 RNA5SP355-201ENST00000365317 135 ntBASIC6.59□□□□□ -1.35
RNF4P78317 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
RNF4P78317 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
RNF4P78317 DEFB108C-201ENST00000400154 252 ntBASIC6.59□□□□□ -1.35
RNF4P78317 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 MEG8-201ENST00000414488 800 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC6.59□□□□□ -1.35
RNF4P78317 NEK4P1-201ENST00000433383 879 ntBASIC6.59□□□□□ -1.35
RNF4P78317 MTCO1P52-201ENST00000433928 531 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AL592114.2-201ENST00000440142 532 ntBASIC6.59□□□□□ -1.35
RNF4P78317 CDC27P1-201ENST00000445384 715 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 CCDC75P1-201ENST00000469247 791 ntBASIC6.59□□□□□ -1.35
RNF4P78317 RPL23AP37-201ENST00000479658 549 ntBASIC6.59□□□□□ -1.35
RNF4P78317 RPL34P33-201ENST00000486062 334 ntBASIC6.59□□□□□ -1.35
RNF4P78317 RN7SL569P-201ENST00000494652 288 ntBASIC6.59□□□□□ -1.35
RNF4P78317 CCDC11P1-201ENST00000503137 1162 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC004069.2-201ENST00000505438 1114 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC109458.1-201ENST00000508858 316 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC010587.2-201ENST00000511727 448 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC008549.1-201ENST00000512900 643 ntBASIC6.59□□□□□ -1.35
RNF4P78317 RFPL4AP3-201ENST00000515267 345 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC6.59□□□□□ -1.35
RNF4P78317 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 OXR1-212ENST00000521592 993 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC6.59□□□□□ -1.35
RNF4P78317 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.59□□□□□ -1.35
RNF4P78317 OR5M6P-201ENST00000530227 937 ntBASIC6.59□□□□□ -1.35
RNF4P78317 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 SLC25A51P2-201ENST00000535708 889 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
RNF4P78317 AC079362.1-202ENST00000547089 278 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 AC023080.1-201ENST00000551663 931 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 NMNAT1P5-201ENST00000559657 841 ntBASIC6.59□□□□□ -1.35
RNF4P78317 CCDC58P1-201ENST00000578567 430 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC107982.3-201ENST00000584957 985 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC6.59□□□□□ -1.35
RNF4P78317 AC128687.1-201ENST00000605304 619 ntBASIC6.59□□□□□ -1.35
RNF4P78317 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC6.59□□□□□ -1.35
RNF4P78317 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.59□□□□□ -1.35
RNF4P78317 AL451074.6-201ENST00000608512 729 ntBASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms