Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
COL4A4P53420 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 AC073365.1-203ENST00000641055 1992 ntBASIC5.97□□□□□ -1.45
COL4A4P53420 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 SNORA16A-201ENST00000384342 137 ntBASIC5.97□□□□□ -1.45
COL4A4P53420 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 NIFKP3-201ENST00000417799 865 ntBASIC5.97□□□□□ -1.45
COL4A4P53420 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.97□□□□□ -1.45
COL4A4P53420 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.97□□□□□ -1.45
COL4A4P53420 SRSF1P1-201ENST00000424058 520 ntBASIC5.97□□□□□ -1.45
COL4A4P53420 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.97□□□□□ -1.45
COL4A4P53420 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.97□□□□□ -1.45
COL4A4P53420 AC109462.1-201ENST00000491087 368 ntBASIC5.97□□□□□ -1.45
COL4A4P53420 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.97□□□□□ -1.45
COL4A4P53420 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.97□□□□□ -1.45
COL4A4P53420 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.97□□□□□ -1.45
COL4A4P53420 BLZF2P-201ENST00000553776 1130 ntBASIC5.97□□□□□ -1.45
COL4A4P53420 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.97□□□□□ -1.45
COL4A4P53420 AL133406.3-201ENST00000606817 541 ntBASIC5.97□□□□□ -1.45
COL4A4P53420 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.97□□□□□ -1.45
COL4A4P53420 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.97□□□□□ -1.45
COL4A4P53420 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
COL4A4P53420 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL4A4P53420 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL4A4P53420 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL4A4P53420 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL4A4P53420 PANDAR-201ENST00000629595 1506 ntBASIC5.96□□□□□ -1.45
COL4A4P53420 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL4A4P53420 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL4A4P53420 AL355488.2-201ENST00000609909 2850 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 RNA5SP305-201ENST00000362665 119 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 ERG-202ENST00000398897 4651 ntTSL 5 BASIC5.96□□□□□ -1.46
COL4A4P53420 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.96□□□□□ -1.46
COL4A4P53420 H3F3BP1-201ENST00000440551 403 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 RPL7P45-201ENST00000455851 743 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 RN7SL447P-201ENST00000494711 245 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.96□□□□□ -1.46
COL4A4P53420 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.96□□□□□ -1.46
COL4A4P53420 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.96□□□□□ -1.46
COL4A4P53420 AC020937.1-201ENST00000519677 1013 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.96□□□□□ -1.46
COL4A4P53420 AC078878.1-201ENST00000539832 958 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.96□□□□□ -1.46
COL4A4P53420 AC127381.1-201ENST00000555979 939 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 AC079075.1-201ENST00000559543 878 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.96□□□□□ -1.46
COL4A4P53420 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.96□□□□□ -1.46
COL4A4P53420 AC087283.1-201ENST00000604029 1074 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 AC109583.2-201ENST00000617367 129 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 AC090527.3-201ENST00000619041 548 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 MIR7703-201ENST00000620784 77 ntBASIC5.96□□□□□ -1.46
COL4A4P53420 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
COL4A4P53420 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.96□□□□□ -1.46
COL4A4P53420 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL4A4P53420 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC5.96□□□□□ -1.46
COL4A4P53420 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL4A4P53420 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
COL4A4P53420 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL4A4P53420 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL4A4P53420 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A4P53420 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
COL4A4P53420 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
COL4A4P53420 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A4P53420 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.95□□□□□ -1.46
COL4A4P53420 FAM96AP1-201ENST00000430879 482 ntBASIC5.95□□□□□ -1.46
COL4A4P53420 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.95□□□□□ -1.46
COL4A4P53420 AC011753.3-201ENST00000443436 406 ntBASIC5.95□□□□□ -1.46
COL4A4P53420 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.95□□□□□ -1.46
COL4A4P53420 IGLV3-24-201ENST00000517477 197 ntBASIC5.95□□□□□ -1.46
COL4A4P53420 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A4P53420 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.95□□□□□ -1.46
COL4A4P53420 AC018558.5-201ENST00000565840 952 ntBASIC5.95□□□□□ -1.46
COL4A4P53420 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.95□□□□□ -1.46
COL4A4P53420 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 MIR7641-1-201ENST00000627518 61 ntBASIC5.95□□□□□ -1.46
COL4A4P53420 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
COL4A4P53420 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms