Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 OR5W1P-201ENST00000423705 938 ntBASIC7.21□□□□□ -1.26
LIG3P49916 LINC01762-205ENST00000437308 539 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG3P49916 AL354941.1-201ENST00000438600 464 ntBASIC7.21□□□□□ -1.26
LIG3P49916 MTCYBP34-201ENST00000439552 670 ntBASIC7.21□□□□□ -1.26
LIG3P49916 AC009237.4-201ENST00000441078 238 ntBASIC7.21□□□□□ -1.26
LIG3P49916 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG3P49916 OR52J1P-201ENST00000450596 932 ntBASIC7.21□□□□□ -1.26
LIG3P49916 H3F3AP5-201ENST00000475267 429 ntBASIC7.21□□□□□ -1.26
LIG3P49916 MYL6P4-201ENST00000477911 453 ntBASIC7.21□□□□□ -1.26
LIG3P49916 RN7SL306P-201ENST00000492941 296 ntBASIC7.21□□□□□ -1.26
LIG3P49916 AC063943.2-201ENST00000495697 534 ntBASIC7.21□□□□□ -1.26
LIG3P49916 LINC01182-201ENST00000503532 582 ntTSL 4 BASIC7.21□□□□□ -1.26
LIG3P49916 PSMA2P2-201ENST00000504319 686 ntBASIC7.21□□□□□ -1.26
LIG3P49916 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG3P49916 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG3P49916 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG3P49916 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC7.21□□□□□ -1.26
LIG3P49916 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG3P49916 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC7.21□□□□□ -1.26
LIG3P49916 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG3P49916 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG3P49916 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG3P49916 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG3P49916 AL392112.1-201ENST00000605115 829 ntBASIC7.21□□□□□ -1.26
LIG3P49916 AL031777.2-201ENST00000611953 196 ntBASIC7.21□□□□□ -1.26
LIG3P49916 AC073114.1-201ENST00000612027 490 ntBASIC7.21□□□□□ -1.26
LIG3P49916 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 FRG1HP-204ENST00000617940 757 ntBASIC7.21□□□□□ -1.26
LIG3P49916 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG3P49916 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG3P49916 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.26
LIG3P49916 KARSP3-201ENST00000571212 1504 ntBASIC7.21□□□□□ -1.26
LIG3P49916 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
LIG3P49916 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC7.2□□□□□ -1.26
LIG3P49916 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
LIG3P49916 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
LIG3P49916 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
LIG3P49916 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 SEC23IP-208ENST00000543134 1461 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 SELE-203ENST00000367775 3389 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIG3P49916 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIG3P49916 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
LIG3P49916 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
LIG3P49916 RNU6-353P-201ENST00000364266 108 ntBASIC7.2□□□□□ -1.26
LIG3P49916 Y_RNA.559-201ENST00000384686 107 ntBASIC7.2□□□□□ -1.26
LIG3P49916 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
LIG3P49916 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 MTCO3P41-201ENST00000414801 328 ntBASIC7.2□□□□□ -1.26
LIG3P49916 MICG-208ENST00000416822 132 ntBASIC7.2□□□□□ -1.26
LIG3P49916 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 AC098592.1-201ENST00000419352 333 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 HCG25-217ENST00000422366 702 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 AC009303.1-201ENST00000426307 352 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AC009362.1-201ENST00000427253 406 ntBASIC7.2□□□□□ -1.26
LIG3P49916 RPSAP32-201ENST00000432681 526 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC7.2□□□□□ -1.26
LIG3P49916 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 AC092170.1-201ENST00000440211 356 ntBASIC7.2□□□□□ -1.26
LIG3P49916 H3F3BP1-201ENST00000440551 403 ntBASIC7.2□□□□□ -1.26
LIG3P49916 SEPT7P2-208ENST00000444755 505 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 NMNAT1P3-201ENST00000457517 888 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 EIF4A2P4-201ENST00000458691 1196 ntBASIC7.2□□□□□ -1.26
LIG3P49916 RNU7-140P-201ENST00000459546 60 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AC025271.1-201ENST00000485045 429 ntBASIC7.2□□□□□ -1.26
LIG3P49916 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
LIG3P49916 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 AC116353.3-201ENST00000511215 249 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC7.2□□□□□ -1.26
LIG3P49916 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC7.2□□□□□ -1.26
LIG3P49916 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 snoZ278.1-201ENST00000517059 112 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC7.2□□□□□ -1.26
LIG3P49916 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 AC105233.3-201ENST00000531125 744 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AP001804.2-201ENST00000533932 910 ntBASIC7.2□□□□□ -1.26
LIG3P49916 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC7.2□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms