Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CUX2O14529 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CUX2O14529 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
CUX2O14529 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
CUX2O14529 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC9.72□□□□□ -0.85
CUX2O14529 AC019205.1-201ENST00000421830 730 ntBASIC9.72□□□□□ -0.85
CUX2O14529 AL389915.1-201ENST00000422463 466 ntBASIC9.72□□□□□ -0.85
CUX2O14529 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC9.72□□□□□ -0.85
CUX2O14529 FAM96AP1-201ENST00000430879 482 ntBASIC9.72□□□□□ -0.85
CUX2O14529 BMS1P19-201ENST00000433925 393 ntBASIC9.72□□□□□ -0.85
CUX2O14529 AC004980.4-201ENST00000513375 203 ntBASIC9.72□□□□□ -0.85
CUX2O14529 OR4A40P-201ENST00000533878 948 ntBASIC9.72□□□□□ -0.85
CUX2O14529 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC9.72□□□□□ -0.85
CUX2O14529 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC9.72□□□□□ -0.85
CUX2O14529 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CUX2O14529 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
CUX2O14529 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
CUX2O14529 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC9.71□□□□□ -0.85
CUX2O14529 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.85
CUX2O14529 TTC3P1-201ENST00000399586 6081 ntBASIC9.71□□□□□ -0.85
CUX2O14529 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC9.71□□□□□ -0.85
CUX2O14529 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC9.71□□□□□ -0.85
CUX2O14529 AOX3P-204ENST00000491025 2107 ntBASIC9.71□□□□□ -0.86
CUX2O14529 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
CUX2O14529 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC9.71□□□□□ -0.86
CUX2O14529 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
CUX2O14529 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC9.71□□□□□ -0.86
CUX2O14529 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC9.71□□□□□ -0.86
CUX2O14529 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC9.71□□□□□ -0.86
CUX2O14529 AC068287.1-201ENST00000430283 295 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC9.71□□□□□ -0.86
CUX2O14529 AL451136.1-201ENST00000435399 325 ntBASIC9.71□□□□□ -0.86
CUX2O14529 OR6D1P-201ENST00000436165 939 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AC006335.2-201ENST00000437993 330 ntBASIC9.71□□□□□ -0.86
CUX2O14529 CT45A11P-201ENST00000448043 1134 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC9.71□□□□□ -0.86
CUX2O14529 snoU13.22-201ENST00000459428 104 ntBASIC9.71□□□□□ -0.86
CUX2O14529 RN7SL570P-201ENST00000484405 292 ntBASIC9.71□□□□□ -0.86
CUX2O14529 RPL38P3-201ENST00000484463 213 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC9.71□□□□□ -0.86
CUX2O14529 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC9.71□□□□□ -0.86
CUX2O14529 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC9.71□□□□□ -0.86
CUX2O14529 AC026688.1-201ENST00000520639 1168 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC9.71□□□□□ -0.86
CUX2O14529 AC068790.7-201ENST00000602347 528 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AC011453.2-201ENST00000603737 729 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AL590392.1-201ENST00000604960 446 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AC024589.2-201ENST00000605642 1294 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AP001521.2-201ENST00000608772 546 ntBASIC9.71□□□□□ -0.86
CUX2O14529 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC9.71□□□□□ -0.86
CUX2O14529 AL391261.1-201ENST00000555712 1479 ntBASIC9.71□□□□□ -0.86
CUX2O14529 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
CUX2O14529 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
CUX2O14529 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
CUX2O14529 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC9.7□□□□□ -0.86
CUX2O14529 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC9.7□□□□□ -0.86
CUX2O14529 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
CUX2O14529 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
CUX2O14529 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
CUX2O14529 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
CUX2O14529 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC9.7□□□□□ -0.86
CUX2O14529 RPL7AP10-201ENST00000481016 791 ntBASIC9.7□□□□□ -0.86
CUX2O14529 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC9.7□□□□□ -0.86
CUX2O14529 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
CUX2O14529 AC127381.1-201ENST00000555979 939 ntBASIC9.7□□□□□ -0.86
CUX2O14529 AC009117.1-201ENST00000563948 554 ntBASIC9.7□□□□□ -0.86
CUX2O14529 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC9.7□□□□□ -0.86
CUX2O14529 AC019193.2-201ENST00000610012 634 ntBASIC9.7□□□□□ -0.86
CUX2O14529 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
CUX2O14529 CASC22-202ENST00000628396 802 ntTSL 5 BASIC9.7□□□□□ -0.86
CUX2O14529 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
CUX2O14529 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC9.7□□□□□ -0.86
CUX2O14529 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
CUX2O14529 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC9.69□□□□□ -0.86
CUX2O14529 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
CUX2O14529 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC9.69□□□□□ -0.86
CUX2O14529 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
CUX2O14529 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
CUX2O14529 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
CUX2O14529 AC004690.1-201ENST00000418216 328 ntBASIC9.69□□□□□ -0.86
CUX2O14529 RPL7P57-201ENST00000423238 740 ntBASIC9.69□□□□□ -0.86
CUX2O14529 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC9.69□□□□□ -0.86
CUX2O14529 RN7SL41P-201ENST00000476144 297 ntBASIC9.69□□□□□ -0.86
CUX2O14529 AC109635.6-201ENST00000525487 1113 ntBASIC9.69□□□□□ -0.86
CUX2O14529 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC9.69□□□□□ -0.86
CUX2O14529 MIR4301-201ENST00000577203 66 ntBASIC9.69□□□□□ -0.86
CUX2O14529 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC9.69□□□□□ -0.86
CUX2O14529 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC9.69□□□□□ -0.86
CUX2O14529 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC9.69□□□□□ -0.86
CUX2O14529 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
CUX2O14529 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC9.69□□□□□ -0.86
CUX2O14529 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC9.69□□□□□ -0.86
CUX2O14529 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC9.68□□□□□ -0.86
CUX2O14529 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC9.68□□□□□ -0.86
CUX2O14529 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
CUX2O14529 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
CUX2O14529 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
CUX2O14529 SNORA57.1-201ENST00000391227 145 ntBASIC9.68□□□□□ -0.86
CUX2O14529 AC078899.1-201ENST00000521432 1185 ntBASIC9.68□□□□□ -0.86
CUX2O14529 AP006289.1-201ENST00000538089 277 ntBASIC9.68□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms