Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
RTF1Q92541 AL391422.3-201ENST00000603791 2761 ntBASIC25.69■■□□□ 1.7
RTF1Q92541 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RTF1Q92541 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RTF1Q92541 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RTF1Q92541 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RTF1Q92541 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC25.69■■□□□ 1.7
RTF1Q92541 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RTF1Q92541 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC25.69■■□□□ 1.7
RTF1Q92541 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RTF1Q92541 TMEM179-206ENST00000616017 1645 ntBASIC25.69■■□□□ 1.7
RTF1Q92541 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RTF1Q92541 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
RTF1Q92541 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC25.68■■□□□ 1.7
RTF1Q92541 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
RTF1Q92541 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RTF1Q92541 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC25.68■■□□□ 1.7
RTF1Q92541 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC25.68■■□□□ 1.7
RTF1Q92541 REXO1L10P-201ENST00000615707 1290 ntBASIC25.68■■□□□ 1.7
RTF1Q92541 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RTF1Q92541 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
RTF1Q92541 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RTF1Q92541 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
RTF1Q92541 AL691432.2-201ENST00000607222 2038 ntBASIC25.68■■□□□ 1.7
RTF1Q92541 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
RTF1Q92541 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RTF1Q92541 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC25.67■■□□□ 1.7
RTF1Q92541 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RTF1Q92541 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
RTF1Q92541 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RTF1Q92541 ECEL1P3-201ENST00000427961 737 ntBASIC25.67■■□□□ 1.7
RTF1Q92541 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RTF1Q92541 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC25.67■■□□□ 1.7
RTF1Q92541 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC25.67■■□□□ 1.7
RTF1Q92541 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC25.67■■□□□ 1.7
RTF1Q92541 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC25.67■■□□□ 1.7
RTF1Q92541 AL445675.2-201ENST00000620291 557 ntBASIC25.67■■□□□ 1.7
RTF1Q92541 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC25.67■■□□□ 1.7
RTF1Q92541 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC25.67■■□□□ 1.7
RTF1Q92541 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
RTF1Q92541 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RTF1Q92541 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RTF1Q92541 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
RTF1Q92541 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
RTF1Q92541 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC25.66■■□□□ 1.7
RTF1Q92541 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC25.66■■□□□ 1.7
RTF1Q92541 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC25.66■■□□□ 1.7
RTF1Q92541 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC25.66■■□□□ 1.7
RTF1Q92541 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC25.66■■□□□ 1.7
RTF1Q92541 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC25.66■■□□□ 1.7
RTF1Q92541 AL031985.4-201ENST00000642138 673 ntBASIC25.66■■□□□ 1.7
RTF1Q92541 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC25.66■■□□□ 1.7
RTF1Q92541 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC25.66■■□□□ 1.7
RTF1Q92541 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTF1Q92541 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC25.65■■□□□ 1.7
RTF1Q92541 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC25.65■■□□□ 1.7
RTF1Q92541 AC087499.1-201ENST00000418141 1075 ntBASIC25.65■■□□□ 1.7
RTF1Q92541 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC25.65■■□□□ 1.7
RTF1Q92541 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC25.65■■□□□ 1.7
RTF1Q92541 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC25.65■■□□□ 1.7
RTF1Q92541 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC25.65■■□□□ 1.7
RTF1Q92541 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTF1Q92541 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTF1Q92541 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC25.64■■□□□ 1.7
RTF1Q92541 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTF1Q92541 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTF1Q92541 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTF1Q92541 UNC93B2-201ENST00000285383 730 ntBASIC25.64■■□□□ 1.7
RTF1Q92541 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTF1Q92541 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTF1Q92541 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
RTF1Q92541 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTF1Q92541 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTF1Q92541 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC25.64■■□□□ 1.7
RTF1Q92541 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
RTF1Q92541 LINC01023-201ENST00000606054 436 ntBASIC25.64■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms