Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
KRT39Q6A163 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
KRT39Q6A163 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.26■□□□□ 0.99
KRT39Q6A163 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
KRT39Q6A163 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.26■□□□□ 0.99
KRT39Q6A163 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
KRT39Q6A163 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.26■□□□□ 0.99
KRT39Q6A163 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.26■□□□□ 0.99
KRT39Q6A163 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.26■□□□□ 0.99
KRT39Q6A163 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.26■□□□□ 0.99
KRT39Q6A163 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.26■□□□□ 0.99
KRT39Q6A163 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT39Q6A163 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT39Q6A163 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
KRT39Q6A163 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.25■□□□□ 0.99
KRT39Q6A163 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
KRT39Q6A163 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT39Q6A163 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.25■□□□□ 0.99
KRT39Q6A163 CD99P1-205ENST00000527459 561 ntBASIC21.25■□□□□ 0.99
KRT39Q6A163 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.25■□□□□ 0.99
KRT39Q6A163 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.25■□□□□ 0.99
KRT39Q6A163 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.25■□□□□ 0.99
KRT39Q6A163 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT39Q6A163 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT39Q6A163 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT39Q6A163 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT39Q6A163 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
KRT39Q6A163 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.25■□□□□ 0.99
KRT39Q6A163 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT39Q6A163 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT39Q6A163 KRT17P3-201ENST00000420566 1262 ntBASIC21.24■□□□□ 0.99
KRT39Q6A163 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.24■□□□□ 0.99
KRT39Q6A163 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
KRT39Q6A163 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.24■□□□□ 0.99
KRT39Q6A163 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.24■□□□□ 0.99
KRT39Q6A163 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.24■□□□□ 0.99
KRT39Q6A163 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
KRT39Q6A163 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.24■□□□□ 0.99
KRT39Q6A163 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
KRT39Q6A163 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
KRT39Q6A163 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT39Q6A163 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT39Q6A163 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
KRT39Q6A163 AP006587.1-201ENST00000534129 1502 ntBASIC21.24■□□□□ 0.99
KRT39Q6A163 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
KRT39Q6A163 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT39Q6A163 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.23■□□□□ 0.99
KRT39Q6A163 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.23■□□□□ 0.99
KRT39Q6A163 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
KRT39Q6A163 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.23■□□□□ 0.99
KRT39Q6A163 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
KRT39Q6A163 ESRRAP1-201ENST00000400596 1257 ntBASIC21.23■□□□□ 0.99
KRT39Q6A163 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.23■□□□□ 0.99
KRT39Q6A163 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.23■□□□□ 0.99
KRT39Q6A163 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.23■□□□□ 0.99
KRT39Q6A163 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT39Q6A163 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
KRT39Q6A163 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.23■□□□□ 0.99
KRT39Q6A163 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT39Q6A163 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT39Q6A163 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.22■□□□□ 0.99
KRT39Q6A163 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT39Q6A163 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT39Q6A163 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
KRT39Q6A163 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT39Q6A163 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
KRT39Q6A163 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.22■□□□□ 0.99
KRT39Q6A163 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT39Q6A163 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT39Q6A163 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.22■□□□□ 0.99
KRT39Q6A163 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.22■□□□□ 0.99
KRT39Q6A163 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.22■□□□□ 0.99
KRT39Q6A163 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.22■□□□□ 0.99
KRT39Q6A163 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.22■□□□□ 0.99
KRT39Q6A163 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT39Q6A163 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.22■□□□□ 0.99
KRT39Q6A163 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
KRT39Q6A163 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT39Q6A163 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms